[ome-users] Unhandled exception after migration

[Kotecki, Jason]

I was able to run the omero fs repos command once I realized that it needed an Omero user and not a linux user. Here is the output:

# | Id   | UUID                                 | Type    | Path
---+------+--------------------------------------+---------+------------------------------------------------------
 0 | 1    | ScriptRepo                           | Script  | /home/omero/OMERO.server-5.0.5-ice35-b47/lib/scripts
 1 | 2    | 69b60b5f-cec8-42f6-8c33-668585685e61 | Public  | /omero_repo2/ManagedRepository
 2 | 3    | f06f1c35-1689-4283-ac0b-412f83a5cbd4 | Public  | /omero_repo2
 3 | 5651 | 0d343001-6051-45a1-912e-659874f9d416 | Public  | /omero_repo2
 4 | 5652 | a652e6b8-be52-417e-b4d5-7921ffb93049 | Managed | /omero_repo2/ManagedRepository

It looks like it created a new managed repository ' a652e6b8-be52-417e-b4d5-7921ffb93049' but my other repository has a type of Public. How can I delete the new managed repository and change the type of my old repository?

Thanks,
Jason

-----Original Message-----
From: ome-users [mailto:ome-users-bounces at lists.openmicroscopy.org.uk] On Behalf Of Mark Carroll
Sent: Friday, November 14, 2014 10:44 AM
To: ome-users at lists.openmicroscopy.org.uk
Subject: Re: [ome-users] Unhandled exception after migration

Dear Jason,

Are there any clues in your Blitz-0.log on the server when you try the failed download or the omero fs repos login? We would certainly be happy to help you diagnose any complaints from that log. I am coming to this thread a little late, but useful information in general may be:

- Blitz-0.log extracts when wrong things happened
- output of bin/omero admin diagnostics
- any other information on how the server is configured (e.g. from bin/omero config get, but don't include any passwords!)
- lines from the originalfile DB table or other relevant tables for the problem repositories and images, and any comments about how the paths and names in the table correspond to how the files on your actual disks are arranged.

 > I'm suspicious of the name '
PublicRepository-69b60b5f-cec8-42f6-8c33-668585685e61'.
'69b60b5f-cec8-42f6-8c33-668585685e61' is my ManagedRepository. Looking at the repositories in the 'originalfile' table of the database, I do not see a PublicRepository. Should there be one?

This part is probably okay, at least: ManagedRepository is a subclass of PublicRepository, and it uses various methods from that class. It would also be good to make sure from psql that the output of this makes sense:

select path from originalfile where name = 'ManagedRepository' and mimetype = 'Repository';

If it is most convenient for you, feel free to risk sending too much information instead of too little: you can zip it all up and upload it via http://scanmail.trustwave.com/?c=129&d=1KPm1MqmabUElLj9Z0PbQdAZJJ0ZOqELAaNTnSDGBQ&u=http%3a%2f%2fqa%2eopenmicroscopy%2eorg%2euk%2fqa%2fupload%2f

In the future, we are thinking that we really ought to write further documentation regarding moving OMERO's binary repository, as it can be tricky. Thank you for your patience as things are now!

Have a good weekend.

Cheers,

Mark

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