[ome-users] Bioformats Exporter plugin in Fiji

[Maier, Lorenz]

Dear all,

am I right that the only way to use the splitting options of the Bioformats Expporter with the ImageJ macro interface is checking the Macro.getOptions()?

Would there be any way to circumvent this, maybe by calling the Java interface of the Exporter directly?

Best,
Lorenz


Von: ome-users-bounces at lists.openmicroscopy.org.uk [mailto:ome-users-bounces at lists.openmicroscopy.org.uk] Im Auftrag von Maier, Lorenz
Gesendet: Freitag, 21. März 2014 15:34
An: ome-users at lists.openmicroscopy.org.uk
Betreff: [ome-users] Bioformats Exporter plugin in Fiji

Dear all,

is there a reason why the bioformats exporter checks only at plugin.arg if splitting C,Z,T is requested? In my eyes, the code should also check Macro.getOptions(). The code in question starts at  bioformats/components/bio-formats-plugins/src/loci/plugins/out/Exporter.java, line 127.


The selection of these options is neither recorded correctly using the macro recorder. It inserts "write write write" in the options and shows a warning that this is probably wrong.

Best,
Lorenz
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