[ome-users] MetaSystems vsi file
LIM Soon Yew John (IMB)
john.lim at imb.a-star.edu.sg
Mon Jul 21 11:33:32 BST 2014
Dear All,
I had encounter a problem opening the .vsi image from MetaSystems attached in the link below:
https://www.dropbox.com/s/kwmca936x3nvi5j/SS1-Case-33.Ki67_M~B.vsi
When I try to open the .vsi format slide scanning data from MetaSystems using Bio-format Importer in Fiji, I got the following error message below:
java.lang.IllegalArgumentException: Invalid series: 0
at loci.formats.FormatReader.seriesToCoreIndex(FormatReader.java:1196)
at loci.formats.FormatReader.setSeries(FormatReader.java:925)
at loci.formats.MetadataTools.populatePixels(MetadataTools.java:173)
at loci.formats.MetadataTools.populatePixels(MetadataTools.java:97)
at loci.formats.in.CellSensReader.initFile(CellSensReader.java:456)
at loci.formats.FormatReader.setId(FormatReader.java:1315)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:494)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144)
at loci.plugins.in.Importer.showDialogs(Importer.java:141)
at loci.plugins.in.Importer.run(Importer.java:79)
at loci.plugins.LociImporter.run(LociImporter.java:81)
at ij.IJ.runUserPlugIn(IJ.java:199)
at ij.IJ.runPlugIn(IJ.java:163)
at ij.IJ.runPlugIn(IJ.java:152)
at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:421)
at HandleExtraFileTypes.run(HandleExtraFileTypes.java:57)
at ij.IJ.runUserPlugIn(IJ.java:199)
at ij.IJ.runPlugIn(IJ.java:163)
at ij.IJ.runPlugIn(IJ.java:152)
at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:454)
at ij.io.Opener.openImage(Opener.java:311)
at ij.io.Opener.openImage(Opener.java:334)
at ij.io.Opener.open(Opener.java:144)
at ij.io.Opener.openAndAddToRecent(Opener.java:247)
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:176)
at ij.plugin.DragAndDrop.run(DragAndDrop.java:152)
at java.lang.Thread.run(Thread.java:662)
Can I used Bio-format Importer to open MetaSystems .vsi file?
Best Regards and Thank You,
John
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