[ome-users] java.lang.illegalArgumentException: Negative position error reporting

[Roger Leigh]

On 18/12/14 20:50, Jeong, Young J. (MU-Student) wrote:
> ​​Hello to whom it may concern,
>
>
> I have initially posted this on imageJ group user page and someone
> commented this error may be due to bugs... So here is what I did and
> what I got afterward.
>
>
>   I recently have started to figure out how to use imageJ to analyze the
> uCT scans of bone geometry. The size of raw file is quite large, which
> is about 16GB. Because of lare size of the file, it gives me an error
> with memory issue. So what I have tried next is to open up file by
> specifying the range of images. The size of file is 2048x2048; 2016
> planes. It shows me an image when I have selected 1(Z begin)-250(Z End)
> with 1 for Z step. The problem arise when I have tried to select beyond
> 250 and it gives me following messages.
>
> The file I am opening is ct.img.hdr file and this scan was done by
> inveon uCT scan. The disc image file (.ct) is ~16GB


Looking at the stacktrace you provided, this looks like it's an issue
with the Inveon reader.  Melissa Linkert has opened a pull request for
the proposed fix here:

   https://github.com/openmicroscopy/bioformats/pull/1502

If you would like to test this with your data, you can try out a build
of this branch.  Alternatively, it should be backported to 5.0 for the
next 5.0.x release, and this will be available as a Fiji update shortly
after.


Kind regards,
Roger

--
Dr Roger Leigh -- Open Microscopy Environment
Wellcome Trust Centre for Gene Regulation and Expression,
College of Life Sciences, University of Dundee, Dow Street,
Dundee DD1 5EH Scotland UK   Tel: (01382) 386364

The University of Dundee is a registered Scottish Charity, No: SC015096