[ome-users] Problem with msr file

[Benjamin Sauer]

Hi everybody,
I tried to import a la vision importer msr file, with two channels via bioformats and I get the following error message;

ImageJ 1.47v; Java 1.6.0_65 [32-bit]; Mac OS X 10.9.4; 61MB of 400MB (15%)
 
java.lang.IllegalArgumentException: ZCT size vs image count mismatch (sizeZ=57, sizeC=3, sizeT=1, total=173)
	at loci.formats.FormatTools.getIndex(FormatTools.java:383)
	at loci.formats.FormatTools.getIndex(FormatTools.java:317)
	at loci.formats.DimensionSwapper.getIndex(DimensionSwapper.java:272)
	at loci.formats.ReaderWrapper.getIndex(ReaderWrapper.java:411)
	at loci.formats.ReaderWrapper.getIndex(ReaderWrapper.java:411)
	at loci.plugins.in.ImagePlusReader.getPlanesToLoad(ImagePlusReader.java:535)
	at loci.plugins.in.ImagePlusReader.readPlanes(ImagePlusReader.java:364)
	at loci.plugins.in.ImagePlusReader.readImage(ImagePlusReader.java:277)
	at loci.plugins.in.ImagePlusReader.readImages(ImagePlusReader.java:238)
	at loci.plugins.in.ImagePlusReader.readImages(ImagePlusReader.java:216)
	at loci.plugins.in.ImagePlusReader.openImagePlus(ImagePlusReader.java:114)
	at loci.plugins.in.Importer.readPixels(Importer.java:150)
	at loci.plugins.in.Importer.run(Importer.java:89)
	at loci.plugins.LociImporter.run(LociImporter.java:81)
	at ij.IJ.runUserPlugIn(IJ.java:195)
	at ij.IJ.runPlugIn(IJ.java:160)
	at ij.Executer.runCommand(Executer.java:128)
	at ij.Executer.run(Executer.java:64)
	at java.lang.Thread.run(Thread.java:695)

I guess this wants to tell me 57 times 3 times 1 is not 173 but 171. I just recorded two channels although 6 would be possible. Other files with just one channel do not pose a problem.

Best regards

Benjamin
------------------------------------------------
Hr. Benjamin Sauer
Institut für biomedizinische Optik
Universität zu Lübeck
Peter-Monnik-Weg 4
23562 Lübeck