[ome-users] problem importing Micro-Manager files

[Melissa Linkert]

Hi Bernie,

Thank you for uploading an example dataset.

> > Our researchers are reporting problems importing Micro-Manager files
> > OMERO release: 5.0.2
> > Micro-Manager: 1.4.17
> > 
> > Files saved as TIFF stack file
> > OMERO import the files but we lose data from 1 channel and the Z stacks.
> > 
> > I'm happy to upload a problem set of files (approx.. 5GB) if you can email me an ftp[ address,

Unfortunately, the uploaded dataset appears to be read correctly with
5.0.2 and later.  With Bio-Formats/OMERO, I see 5 positions each with 2
channels, 153 timepoints, and 1 Z section.

When opening the dataset in Micro-Manager 1.4.18, I also see 2 channels,
5 positions, and 153 timepoints.  Do you see Z stacks when opening this
dataset in Micro-Manager?  If not, is there a different dataset that
would show the problem?

Regards,
-Melissa

On Mon, Aug 04, 2014 at 07:15:44PM -0500, Melissa Linkert wrote:
> Hi Bernie,
> 
> > Our researchers are reporting problems importing Micro-Manager files
> > OMERO release: 5.0.2
> > Micro-Manager: 1.4.17
> > 
> > Files saved as TIFF stack file
> > OMERO import the files but we lose data from 1 channel and the Z stacks.
> > 
> > I'm happy to upload a problem set of files (approx.. 5GB) if you can email me an ftp[ address,
> 
> Thank you for reporting this, and my apologies for the delay.
> 
> If you could upload the problematic dataset that would be much appreciated;
> none of the data that we currently have exhibits this problem.  I have sent
> FTP information via private email.
> 
> Regards,
> -Melissa
> 
> On Wed, Jul 30, 2014 at 12:26:42PM +0000, Bernie Broughton wrote:
> > Hello,
> > 
> > Our researchers are reporting problems importing Micro-Manager files
> > OMERO release: 5.0.2
> > Micro-Manager: 1.4.17
> > 
> > Files saved as TIFF stack file
> > OMERO import the files but we lose data from 1 channel and the Z stacks.
> > 
> > I'm happy to upload a problem set of files (approx.. 5GB) if you can email me an ftp[ address,
> > 
> > thanks,
> > 
> > Bernie Broughton
> > IT Manager
> > Genome Damage and Stability Centre
> > 
> > _______________________________________________
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> > ome-users at lists.openmicroscopy.org.uk
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