[ome-users] bug loci_tools 4.4.8

[Curtis Rueden]

Hi Dimiter,

Thanks for the bug report. It is better to write to a public mailing list.
I am CCing ome-users, which is the best list to use for reporting
Bio-Formats bugs.

> ImageJ 1.48c; Java 1.6.0_20 [64-bit]; Windows 7 6.1; 14MB of 3024MB
> (<1%)
>
> java.lang.ArrayIndexOutOfBoundsException at
> java.lang.System.arraycopy(Native Method) at
> loci.formats.in.NativeQTReader.openBytes(NativeQTReader.java:232)

Version 4.4.9 was recently released. If a fully updated Fiji still has this
problem, it would be great if you could send a sample non-working file. You
can upload one here:

http://qa.openmicroscopy.org.uk/qa/upload/

Note that QuickTime is unfortunately not on the list of uploadable formats;
you can work around this limitation by zipping the file and choosing Zip
format from the list.

Regards,
Curtis


On Wed, Sep 25, 2013 at 10:22 AM, Dimiter Prodanov <dimiterpp at gmail.com>wrote:

>
>
> ---------- Forwarded message ----------
> From: Dimiter Prodanov <dimiterpp at gmail.com>
> Date: Wed, Sep 25, 2013 at 5:06 PM
> Subject: bug loci_tools 4.4.8
> To: CurtisRueden at gmail.com
>
>
> Hi Curties,
>
> I have tried opening a QucikTime movie using LOCI 4.4.8
> Here is what I got.
>
> Dimiter
>
> ImageJ 1.48c; Java 1.6.0_20 [64-bit]; Windows 7 6.1; 14MB of 3024MB (<1%)
>
> java.lang.ArrayIndexOutOfBoundsException
> at java.lang.System.arraycopy(Native Method)
> at loci.formats.in.NativeQTReader.openBytes(NativeQTReader.java:232)
>  at loci.formats.DelegateReader.openBytes(DelegateReader.java:211)
> at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:197)
>  at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:189)
> at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:197)
>  at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:317)
> at loci.formats.DimensionSwapper.openBytes(DimensionSwapper.java:262)
>  at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:317)
> at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:273)
>  at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:265)
> at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:305)
>  at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:305)
> at
> loci.plugins.util.ImageProcessorReader.openProcessors(ImageProcessorReader.java:190)
>  at
> loci.plugins.in.ImagePlusReader.readProcessors(ImagePlusReader.java:416)
> at loci.plugins.in.ImagePlusReader.readPlanes(ImagePlusReader.java:380)
>  at loci.plugins.in.ImagePlusReader.readImage(ImagePlusReader.java:277)
> at loci.plugins.in.ImagePlusReader.readImages(ImagePlusReader.java:238)
>  at loci.plugins.in.ImagePlusReader.readImages(ImagePlusReader.java:216)
> at loci.plugins.in.ImagePlusReader.openImagePlus(ImagePlusReader.java:114)
>  at loci.plugins.in.Importer.readPixels(Importer.java:150)
> at loci.plugins.in.Importer.run(Importer.java:89)
>  at loci.plugins.LociImporter.run(LociImporter.java:81)
> at ij.IJ.runUserPlugIn(IJ.java:196)
> at ij.IJ.runPlugIn(IJ.java:160)
>  at ij.Executer.runCommand(Executer.java:131)
> at ij.Executer.run(Executer.java:64)
> at java.lang.Thread.run(Thread.java:619)
>
>
>
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