[ome-users] Matlab script for MRXS format images

[Melissa Linkert]

Hi Sheng,

> I notice that Matlab is able to call bio-formats in order to load
> microscopy images into Matlab. I am working on whole slide images with MRXS
> format. I mostly do image analysis in Matlab.  I wonder whether or not
> bio-formats support MRXS format images? It looks like it is not under the
> support format.

No, .mrxs files are not supported by Bio-Formats, though we do have plans
to support them in the near future:

http://trac.openmicroscopy.org.uk/ome/ticket/4121

Once those files are supported you should be able to read them in
Matlab.

> Are there any other ways I can load MRXS format images
> directly into Matlab?

Not to my knowledge, no.

Regards,
-Melissa

On Wed, Mar 20, 2013 at 05:25:29PM -0700, Sheng You wrote:
> Hi,
> 
> I notice that Matlab is able to call bio-formats in order to load
> microscopy images into Matlab. I am working on whole slide images with MRXS
> format. I mostly do image analysis in Matlab.  I wonder whether or not
> bio-formats support MRXS format images? It looks like it is not under the
> support format. Are there any other ways I can load MRXS format images
> directly into Matlab?
> 
> Thanks so much.
> 
> Regards,
> 
> 
> -- 
> Sheng You
> Image Analysis Scientist
> 
> Presage Biosciences, Inc.****
> 
> 530 Fairview Avenue North, Suite 1000****
> 
> Seattle, WA 98109****
> 206-995-88243
> sheng.you at presagebio.com

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