[ome-users] Evotec/Opera FLEX file format issue

Jeff C Hanson hanson_jeffrey_c at lilly.com
Tue Jul 16 18:20:47 BST 2013


                I have flex file that I am having trouble reading in FIJI using the BioFormats reader.  I was able to get read older flex images, but not these newer ones.  I have attached the FIJI error message which includes my OS, Java, ImageJ version #'s.
                The example file I have is 27MB, which is too big for my email system to send.

Thanks,
Jeff
---
(Fiji Is Just) ImageJ 1.47v; Java 1.6.0_24 [64-bit]; Windows 7 6.1; 23MB of 2979MB (<1%)

java.lang.reflect.InvocationTargetException
                at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
                at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
                at java.lang.reflect.Method.invoke(Method.java:597)
                at ij.Command.runPlugIn(Command.java:148)
                at ij.Command.runCommand(Command.java:97)
                at ij.Executer.run(Executer.java:64)
                at java.lang.Thread.run(Thread.java:662)
Caused by: java.lang.NullPointerException
                at loci.formats.in.FlexReader.populateMetadataStore(FlexReader.java:628)
                at loci.formats.in.FlexReader.initFlexFile(FlexReader.java:502)
                at loci.formats.in.FlexReader.initFile(FlexReader.java:334)
                at loci.formats.FormatReader.setId(FormatReader.java:1183)
                at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:482)
                at loci.plugins.in.ImportProcess.execute(ImportProcess.java:146)
                at loci.plugins.in.Importer.showDialogs(Importer.java:141)
                at loci.plugins.in.Importer.run(Importer.java:79)
                at loci.plugins.LociImporter.run(LociImporter.java:81)
                at ij.IJ.runUserPlugIn(IJ.java:195)
                at ij.IJ.runPlugIn(IJ.java:160)
                ... 8 more



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