[ome-users] ome-users Digest, Vol 94, Issue 5

Ponti Aaron aaron.ponti at bsse.ethz.ch
Mon Jan 21 12:22:41 GMT 2013


Vengo da te. Il Kindle ha il wireless? Porta il cavo USB.

Dr. Aaron Ponti
Software and Data Management Engineer
ETH Zürich
Department of Biosystems Science and Engineering (D-BSSE)
Mattenstrasse 26
4058 Basel, Switzerland
aaron.ponti at bsse.ethz.ch
+41 61 387 33 74

On 1/21/13 1:00 PM, "ome-users-request at lists.openmicroscopy.org.uk"
<ome-users-request at lists.openmicroscopy.org.uk> wrote:

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>Today's Topics:
>   1. Re: import error (Josh Moore)
>Message: 1
>Date: Mon, 21 Jan 2013 10:38:55 +0100
>From: Josh Moore <josh at glencoesoftware.com>
>To: Damir Sudar <dsudar at lbl.gov>
>Cc: ome-users at lists.openmicroscopy.org.uk
>Subject: Re: [ome-users] import error
>Message-ID: <E2DBCCAE-975F-4C2B-BDB0-F611EB11E864 at glencoesoftware.com>
>Content-Type: text/plain; charset=us-ascii
>On Jan 18, 2013, at 9:54 PM, Damir Sudar wrote:
>> Hi,
>Hi Damir,
>> Using the Insight Importer I get the error below with one specific large
>> (3.8GB) LSM file acquired using a Zeiss LSM710. The file has 3 color
>> channels, 26 Z planes, and is 5120 by 5120 pixels (we used 5 x 5
>> I'll be happy to upload the file somewhere if you have a site that will
>> accept a ~4GB upload. Note that other (somewhat smaller LSM files
>> the same way import fine. The offending file is just a bit bigger but
>> has no trouble with it.
>> Enclosed is the log file that describes my environment. Server runs on
>> Ubuntu 12.04LTS with Java 1.7.0_u11 (all 64-bit).
>> Any suggestions?
>This isn't something I've seen before. What type of file system do you
>have OMERO running on? Also, would it be possible to also get the server
>log, and possibly the output of master.err and master.out?
>> Thanks,
>> - Damir
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>End of ome-users Digest, Vol 94, Issue 5

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