[ome-users] Saving as Quicktime fails after latest Fiji update
Matt Wyczalkowski
matt.wyczalkowski at gmail.com
Mon Feb 11 14:20:17 GMT 2013
Hi,
After a recent update by Fiji, the Loci Bio-formats Exporter Quicktime
functionality fails. This has worked well in the past.
I am running Mac OS X 10.6.8.
ImageJ: 1.47i
Java: 1.6.0_37 (64 bit)
Loci Plugins for ImageJ, revision d58fa88, built 31 Jan 2013
Release: 4.5-DEV
"Update Fiji" indicates Fiji is up to date.
Steps to reproduce error:
1) File -> New... -> Image. 400x400 pix, 3 stacks
2) Plugins -> LOCI -> BioFormats Exporter.
3) Save as: foo.mov, Quicktime Format.
4) None of the "Write each..." boxes checked.
I get the following exception:
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at ij.Command.runPlugIn(Command.java:148)
at ij.Command.runCommand(Command.java:97)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.IllegalArgumentException: Invalid Z size: 0
at loci.formats.FormatTools.getZCTCoords(FormatTools.java:403)
at loci.plugins.out.Exporter.run(Exporter.java:545)
at loci.plugins.LociExporter.run(LociExporter.java:77)
at
ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:262)
at
ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:111)
at ij.IJ.runUserPlugIn(IJ.java:187)
at ij.IJ.runPlugIn(IJ.java:152)
... 8 more
Any help would be appreciated.
Regards,
Matt
---
Matthew A. Wyczalkowski, Ph.D.
NIH NRSA Postdoctoral Fellow
Taber Lab, Department of Biomedical Engineering
Washington University in St. Louis
http://taberlab.seas.wustl.edu
wyczalkowskim at wustl.edu
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