[ome-users] omero installation error

[Josh Moore]

Hi Oscar,

On Sep 21, 2012, at 8:34 PM, Oscar wrote:

> I added the following lines in my bashrc according to the README of Ice3.4.1
> export ICE_HOME=/usr/share/Ice-3.4.1
> export PYTHONPATH=/usr/lib/python2.7:$ICE_HOME/python
> export DYLD_LIBRARY_PATH=/usr/share/java:/usr/lib/:/usr/share/Ice-3.4.1:$DYLD_LIBRARY_PATH
> export CLASSPATH=$ICE_HOME/lib/Ice.jar:$ICE_HOME/lib/Freeze.jar:$ICE_HOME/lib/db.jar:$CLASSPATH
> export PATH=$PATH:$JAVA_HOME/bin:$JRE_HOME/bin:$ICE_HOME/bin:$POSTGRES_HOME/bin
> #ant -Dice.home=$ICE_HOME

At this point, is "slice2java --version" returning "3.4.1"?


> Still got the same error. (pasted below again):
> ==> ./build.py -Dice.home=/usr/local build-default
> Error getting version for BUILD_NUMBER=
> Result: 133
> 
> BUILD FAILED
> /private/tmp/brew-omero-4.4.1-sPcQ/build.xml:36: The following error
> occurred while executing this line:
> /private/tmp/brew-omero-4.4.1-sPcQ/components/antlib/resources/global.xml:310:
> Cannot find slice2java!
> 
>                    *******************************************************
>                    Ice is not properly installed. Cannot find slice2java
>                    *******************************************************
> 
> Total time: 0 seconds
> 
> Looks like the ice.home wasn't set right, /usr/local isn't where Ice is
> installed. Note the last line in my environment file which I commented out.
> It is in the README file, but it gives me error if I have it in there. Does
> it have to do with the error? How do I set ice.home correctly in my bashrc.
> Also, Ice Readme says either ice.home or ICE_HOME works, but it seems
> ICE_HOME has been  ignored by homebrew the whole time, even though it is
> set in bashrc

There are several things that we're trying to workout at once. My assumption is that if you have slice2java working, then the omero build (./build.py) should complete. If not, you may have to install Ice via homebrew in which case ice.home/ICE_HOME would in fact be under /usr/local.

Cheers,
~Josh.


> On Fri, Sep 21, 2012 at 9:25 AM, Josh Moore <josh at glencoesoftware.com>wrote:
> 
>> 
>> On Sep 21, 2012, at 4:17 PM, Oscar wrote:
>> 
>>> I did the exact command `brew --prefix ice`/bin/slicejava --version, it
>>> said: -bash: /usr/local/Cellar/ice/3.4.2/bin/slicejava: No such file or
>>> directory
>>> 
>>> I do not understand why it points to Cellar while Ice is installed under
>>> /usr/share/Ice-3.4.1 by default.
>>> 
>>> Then I tried "/usr/share/Ice-3.4.1/bin/slice2java --version" still
>> nothing,
>>> but gave me this error:
>>> 
>>> dyld: Library not loaded: /opt/Ice-3.4/lib/libSlice.34.dylib
>>> Referenced from: /usr/share/Ice-3.4.1/bin/slice2java
>>> Reason: image not found
>>> Trace/BPT trap: 5
>> 
>> Ah, ok. If you've installed Ice under /usr/share/Ice-3.4.1 (which doesn't
>> belong to homebrew), then you'll need to set PATH and DYLD_LIBRARY_PATH to
>> point at bin and lib, respectively, to get Ice running. This is what is
>> described in the README under Ice-3.4.1.
>> 
>> Cheers,
>> ~Josh.
>> 
>> 
>>> On Fri, Sep 21, 2012 at 9:11 AM, Josh Moore <josh at glencoesoftware.com
>>> wrote:
>>> 
>>>> 
>>>> On Sep 21, 2012, at 4:08 PM, Oscar wrote:
>>>> 
>>>>> slice2java --version (-version, -v) or even man slice2java gave me
>>>> nothing,
>>>>> but it came with Ice-3.4 if that helps.
>>>> 
>>>> So until "slice2java --version" works properly the OMERO build can
>>>> definitely not complete. What's on your $PATH?  Does `brew --prefix
>>>> ice`/bin/slicejava --version  return anything?
>>>> 
>>>> Cheers,
>>>> ~Josh
>>>> 
>>>> 
>>>>> The link for the walk-thru is:
>>>>> 
>>>> 
>> http://www.openmicroscopy.org/site/support/omero4/server/install-walkthrough-on-10.7-using-homebrew
>>>>> 
>>>>> Thanks
>>>>> 
>>>>> On Fri, Sep 21, 2012 at 2:54 AM, Josh Moore <josh at glencoesoftware.com
>>>>> wrote:
>>>>> 
>>>>>> Hi Oscar,
>>>>>> 
>>>>>> On Sep 20, 2012, at 11:40 PM, Oscar wrote:
>>>>>> 
>>>>>>> I was following the walkthrough of installing Omero with Homebrew on
>>>> Mac
>>>>>>> Lion and got stuck at the "brew install omero" step. Got the
>> following
>>>>>>> error:
>>>>>> 
>>>>>> Can you post the link to the walk-through you're using just to make
>> sure
>>>>>> we're looking at the same version?
>>>>>> 
>>>>>>> ==> ./build.py -Dice.home=/usr/local build-default
>>>>>>> Error getting version for BUILD_NUMBER=
>>>>>>> Result: 133
>>>>>>> 
>>>>>>> BUILD FAILED
>>>>>>> /private/tmp/brew-omero-4.4.1-gxMx/build.xml:36: The following error
>>>>>>> occurred while executing this line:
>>>>>>> 
>>>>>> 
>>>> 
>> /private/tmp/brew-omero-4.4.1-gxMx/components/antlib/resources/global.xml:310:
>>>>>>> Cannot find slice2java!
>>>>>>> 
>>>>>>> 
>>>>>> *******************************************************
>>>>>>>                 Ice is not properly installed. Cannot find
>> slice2java
>>>>>>> 
>>>>>> *******************************************************
>>>>>>> 
>>>>>>> I did a google search on this matter and found that similar question
>>>> has
>>>>>>> been asked in the past. It could be resolved by creating a softlink
>> of
>>>>>>> slice2java from Ice3.4 directory to /usr/local/bin. Did that but
>> still
>>>>>> got
>>>>>>> the same error. Any suggestions?
>>>>>> 
>>>>>> 
>>>>>> What do `slice2java --version` and `which slice2java` say?
>>>>>> 
>>>>>> Cheers,
>>>>>> ~Josh.
>>>>>> 
>>>>>> 
>>>> 
>>>> 
>> 
>>