[ome-users] Unable to export to jpg2000

[paletzki]

Hello
I have been try to export images using the LOCI Bio-Formats plugin in Fiji with no success.  I can get it to work with 8-bit grayscale images but not RGB color images.  Every time I try to export it stops and an Exception window opens.  I have updated Fiji (1.47c) and Java (java 1.6.0.33 on a Mac OSX 10.6.8, and java version 7 update 7 on a Windows 7 PC) and I have installed the latest Trunk, and Daily Build (Oct 5, 2012).   The Exception files from the Mac and PC are similar and I have included both below.   My images are tiff files with RGB channels but nothing else.  I have a attached a small version of an image in jpeg format just to save space.  We do all of our image processing and analysis using Fiji, but need to send the files to collaborators as jpg2000s and I hope to batch process the conversion of tiffs to JPG2000 because we have 100s of files that need conversion.    I was able to use Photoshop to save an RGB tiff image into jp2 format, but unfortunately the Photoshop Automator does not support this function making it an impractical way to convert 100s of files.

Any help would be greatly appreciated.
Thanks
Ron 


Exception list from Mac
java.lang.reflect.InvocationTargetException
at sun.reflect.GeneratedMethodAccessor5.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at ij.Command.runPlugIn(Command.java:146)
at ij.Command.runCommand(Command.java:95)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.IllegalArgumentException: Raster sun.awt.image.SunWritableRaster at 5549f0e is incompatible with ColorModel DirectColorModel: rmask=ff0000 gmask=ff00 bmask=ff amask=0
at java.awt.image.BufferedImage.<init>(BufferedImage.java:614)
at loci.formats.gui.AWTImageTools.constructImage(AWTImageTools.java:736)
at loci.formats.codec.JPEG2000Codec.compress(JPEG2000Codec.java:133)
at loci.formats.out.JPEG2000Writer.compressBuffer(JPEG2000Writer.java:130)
at loci.formats.out.JPEG2000Writer.saveBytes(JPEG2000Writer.java:90)
at loci.formats.FormatWriter.saveBytes(FormatWriter.java:136)
at loci.plugins.out.Exporter.run(Exporter.java:549)
at loci.plugins.LociExporter.run(LociExporter.java:77)
at ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:256)
at ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:105)
at ij.IJ.runUserPlugIn(IJ.java:187)
at ij.IJ.runPlugIn(IJ.java:152)
... 7 more

Exception list from PC
java.lang.reflect.InvocationTargetException

	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)

	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)

	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)

	at java.lang.reflect.Method.invoke(Method.java:597)

	at ij.Command.runPlugIn(Command.java:146)

	at ij.Command.runCommand(Command.java:95)

	at ij.Executer.run(Executer.java:64)

	at java.lang.Thread.run(Thread.java:662)

Caused by: java.lang.IllegalArgumentException: Raster sun.awt.image.SunWritableRaster at 70b9cab2 is incompatible with ColorModel DirectColorModel: rmask=ff0000 gmask=ff00 bmask=ff amask=0

	at java.awt.image.BufferedImage.<init>(BufferedImage.java:611)

	at loci.formats.gui.AWTImageTools.constructImage(AWTImageTools.java:736)

	at loci.formats.codec.JPEG2000Codec.compress(JPEG2000Codec.java:133)

	at loci.formats.out.JPEG2000Writer.compressBuffer(JPEG2000Writer.java:130)

	at loci.formats.out.JPEG2000Writer.saveBytes(JPEG2000Writer.java:90)

	at loci.formats.FormatWriter.saveBytes(FormatWriter.java:136)

	at loci.plugins.out.Exporter.run(Exporter.java:549)

	at loci.plugins.LociExporter.run(LociExporter.java:77)

	at ij.plugin.filter.PlugInFilterRunner.processOneImage(PlugInFilterRunner.java:256)

	at ij.plugin.filter.PlugInFilterRunner.<init>(PlugInFilterRunner.java:105)

	at ij.IJ.runUserPlugIn(IJ.java:187)

	at ij.IJ.runPlugIn(IJ.java:152)

	... 8 more

Example image


Ronald Paletzki, PhD
Biologist/Contractor
LSN/NIMH/NIH
Bldg49/ Rm 5A36
Bethesda, MD
301-443-0711






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