[ome-users] annotations - xml

[Chris Allan]

No problem Brian.

On 12 Jun 2012, at 18:38, Brian Westra wrote:

> Thanks! I was curious if there was a way to export the XML as a stand-alone file, and it sounds like there isn't.
> 
> Any info from anyone else who is working on extending the metadata schema would be appreciated.
> 
> Brian
> 
> On Tue, Jun 12, 2012 at 1:44 AM, Chris Allan <callan at lifesci.dundee.ac.uk> wrote:
> Hi Brian,
> 
> On 11 Jun 2012, at 22:27, Brian Westra wrote:
> 
> > Can you point me to instructions on how to export to XML? I see a screenshot on this page for an upcoming version that looks different than my current client (http://www.openmicroscopy.org/site/support/legacy/ome-server/using-ome-server/web/ome-xml-export). Alas, no instructions.
> 
> Export to OME-TIFF (which contains the OME-XML) can be performed in OMERO.insight via the "Export as OME-TIFF..." option in the "Display the saving options" button in the right hand panel toolbar when selecting an image.
> 
> > I'm also wondering if you know of any labs/groups that have modified the schema and OMERO Insight/Editor to represent specific fields from standard metadata schema, such as from EML or Darwin Core.
> 
> I'll leave that open to ome-users for someone to speak up about. We've done something like that using structured XML annotations but there is currently no infrastructure in the OMERO clients to "force" specific fields or be any more clever about specific "standard" schemata.
> 
> > Thanks,
> > Brian
> >
> > On Tue, Jun 5, 2012 at 6:02 AM, Chris Allan <callan at lifesci.dundee.ac.uk> wrote:
> > Annotations are represented in the OME-XML data model by the SA schema. All annotations on an Image should be places within the OME-TIFF when exported from OMERO.
> >
> > -Chris
> >
> > On 2 Jun 2012, at 05:43, Brian Westra wrote:
> >
> > > Hi,
> > >
> > > I'm looking for information on how the metadata represented by tags, comments, descriptions, and attachments ("experiment" files or otherwise), can be exported from the OME database when they are associated with a particular image file. As far as I can tell none of them are represented in the OME XML schema. So far I've found this page http://trac.openmicroscopy.org.uk/ome/wiki/StructuredAnnotations
> > >
> > > If an image were to be exported from OMERO, is there a way to export these other types of metadata rather than having to recreate them?
> > >
> > > Thanks,
> > > Brian
> > > _______________________________________________
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> >
> >
> 
>