[ome-users] metadata in Nikon nd2 files

Christian Wenzl christian.wenzl at cos.uni-heidelberg.de
Wed Aug 22 15:22:41 BST 2012


Hi,

I've noticed that upon importing Nikon nd2 image files into Fiji using 
the LOCI BioFormats importer the metadate are not correctly read. If you 
open for example a nd2 file of a z-stack and go to Image -> 
Properties... the numbers for Slices (z) and Frames (t) are exchanged. 
Meaning for a stack of 100 slices at one timepoint it shows 1 slice and 
100 frames. In addition the voxel depth is always 1.0 regardless of the 
true value. The pixel width and height are imported correctly. Are you 
aware of this problem or will there be a solution soon?

Best,
Christian



More information about the ome-users mailing list