[ome-users] Reading Metadata from a script

jburel j.burel at dundee.ac.uk
Mon Sep 19 18:17:50 BST 2011


hi Stefan

The metadata you are looking for are read when the image is imported  
and stored in a file annotation that we then link to the image
A way to achieve that, given an image id
  * load the annotation related to the image and look for a file  
annotation (original_metadata.txt). using the metadata service using  
the loadAnnotations method
  * From the file annotation you can access the original File. If you  
use the previous method the original file will be loaded.
  * Download the original file using the rawFileStore i.e.

RawFileStorePrx store = getRawFileService();
store.setFileId(originalFileID);
then read the data using the store.read method

Hope it helps

Jmarie

On 19 Sep 2011, at 16:13, Stefan Dürrenberger wrote:

> Hi,
>
> I'm trying to write a script for OMERO to export images and some
> metadata. There are a few examples for images, but I can't find any  
> for
> exporting metadata. I'm looking especially for data listed under
> Acquisition/Original Metadata/GlobalMetadata in Insight.
>
> Does anyone have an example script for me or pointers to more
> documentation?
>
> thanks,
>
> Stefan
>
>
>
> -- 
> Stefan Dürrenberger
> Universität Basel
> Zentrum für Mikroskopie (ZMB)
> Klingelbergstrasse 50
> CH-4056 Basel
> Tel.: +41-(0)61-267 14 05
> Fax: +41-(0)61-267 14 10
>
> Email: stefan.duerrenberger at unibas.ch
>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
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