[ome-users] Couple of admin questions

[Leon Kolchinsky]

Hi,

I've checked the new version and it seems that the patch is already there ;)
No problem with web client ;)

Cheers,
Leon Kolchinsky



On Fri, Oct 21, 2011 at 23:27, Josh Moore <josh at glencoesoftware.com> wrote:

>
> On Oct 17, 2011, at 2:57 AM, Leon Kolchinsky wrote:
>
> > Hello Josh,
>
> Hi Leon,
>
> > Here is the output from 2 Omero servers -
> >
> > Server1:
> > [omero at vera143 pil]$ make
> > python t1.py
> >  Found PIL.Image: <module 'PIL.Image' from
> > '/usr/lib64/python2.6/site-packages/PIL/Image.pyc'>
> > python t2.py
> >  Found Image:<module 'Image' from
> > '/usr/lib64/python2.6/site-packages/PIL/Image.pyc'>
> > python t3.py
> >  Found PIL.Image: <module 'PIL.Image' from
> > '/usr/lib64/python2.6/site-packages/PIL/Image.pyc'>
> >  Reimported Image: <module 'Image' from
> > '/usr/lib64/python2.6/site-packages/PIL/Image.pyc'>
> >
> > Server2:
> > [omero at vera145 pil]$ make
> > python t1.py
> >  Found PIL.Image: <module 'PIL.Image' from
> > '/usr/lib64/python2.6/site-packages/PIL/Image.pyc'>
> > python t2.py
> >  Found Image:<module 'Image' from
> > '/usr/lib64/python2.6/site-packages/PIL/Image.pyc'>
> > python t3.py
> >  Found PIL.Image: <module 'PIL.Image' from
> > '/usr/lib64/python2.6/site-packages/PIL/Image.pyc'>
> >  Reimported Image: <module 'Image' from
> > '/usr/lib64/python2.6/site-packages/PIL/Image.pyc'>
> >
> > Seems OK, right?
> > I guess I'll check it again with the new version of Omero (when it's
> > released).
>
> It does look correct, i.e. no other mismatched libraries, etc. Let us know
> how the web client functions without the patch.
>
> Cheers,
> ~Josh.
>
>
> > Thanks,
> > Leon Kolchinsky
> >
> >
> >
> > On Wed, Oct 12, 2011 at 20:04, Josh Moore <josh at glencoesoftware.com>
> wrote:
> >
> >>
> >> On Oct 12, 2011, at 1:50 AM, Leon Kolchinsky wrote:
> >>
> >>> Hi,
> >>>
> >>>
> >>> On Tue, Oct 11, 2011 at 20:00, Josh Moore <josh at glencoesoftware.com>
> >> wrote:
> >>>
> >>>>
> >>>> On Oct 11, 2011, at 6:43 AM, Leon Kolchinsky wrote:
> >>>>
> >>>>> Hello,
> >>>>>
> >>>>> 1. How do I run auto "cleanse" job via cron (so it won't ask me for
> >>>> username
> >>>>> and password)?
> >>>>>
> >>>>> "$ /srv/omeroserver/bin/omero -s localhost admin cleanse
> >> /srv/omerodata"
> >>>> -
> >>>>> asks for username/pass
> >>>>> "$ /srv/omeroserver/bin/omero -s root at localhost admin cleanse
> >>>>> /srv/omerodata" - asks for pass
> >>>>
> >>>> There's currently no way to login passwordlessly, but I've added
> >>>> https://trac.openmicroscopy.org.uk/ome/ticket/6957 in order to
> examine
> >>>> adding support for that. Until then, you'll need to follow the recipes
> >> on
> >>>> the backup-and-restore page:
> >>>>
> >>>>
> >>>>
> >>
> https://www.openmicroscopy.org/site/support/omero4/server/backup-and-restore
> >>>
> >>>
> >>> Thanks, I'll try that.
> >>>
> >>>>
> >>>>
> >>>>> 2. Is it possible to include this patch into Omero releases (from
> Chris
> >>>>> Allan):
> >>>>>
> >>>>
> >>
> http://users.openmicroscopy.org.uk/~cxallan/pil_image_import_inline.patch
> >>>>>
> >>>>> It solves some client issues for us (python 2.6).
> >>>>>
> >>>>> This is how I patch OMERO web client:
> >>>>> [root at vera144 log]# cd /srv/OMERO.server-Beta-4.3.2/lib/python/
> >>>>> [root at vera144 python]# wget
> >>>>>
> >>>>
> >>
> http://users.openmicroscopy.org.uk/~cxallan/pil_image_import_inline.patch
> >>>>> [root at vera144 python]# cp omeroweb/webclient/webclient_gateway.py
> >>>>> omeroweb/webclient/webclient_gateway.py.orig
> >>>>> [root at vera144 python]# patch -p0 < pil_image_import_inline.patch
> >>>>> patching file omeroweb/webclient/webclient_gateway.py
> >>>>> [root at vera144 python]# chown omero.omero
> >>>>> omeroweb/webclient/webclient_gateway.pyl
> >>>>
> >>>> Unfortunately, it's still unclear why this patch is only necessary for
> >> your
> >>>> installation, and therefore, it's likely that adding this would break
> >> other
> >>>> installations. The import block at the top of that file:
> >>>>
> >>>> try:
> >>>>  from PIL import Image, ImageDraw # see ticket:2597
> >>>> except ImportError:
> >>>>  try:
> >>>>      import Image, ImageDraw # see ticket:2597
> >>>>  except:
> >>>>      logger.error("You need to install the Python Imaging Library. Get
> >> it
> >>>> at http://www.pythonware.com/products/pil/")
> >>>>      logger.error(traceback.format_exc())
> >>>>
> >>>> should definitely have already imported "Image". If there are any
> >> generic
> >>>> fixes you can make to that block so that your installation works
> without
> >>>> Chris' patch, that would be something we could add to the main
> codebase.
> >>>>
> >>> Hmm, I'm not a python user myself so it's kinda Chinese for me.
> >>> Sorry, I don't have any python skills (except of installing one and
> it's
> >>> modules.....)
> >>> Anyway AFAIK, additional "Import" shouldn't break anything in theory.
> >>
> >> The issue with the import is that without the try/except block on any
> >> system that requires the "PIL" prefix, it will fail. I'm attaching a zip
> >> with a make file, could you unpack it and run it on your system:
> >>
> >> /tmp $ unzip pil.zip
> >> Archive:  pil.zip
> >>  creating: pil/
> >> inflating: pil/Makefile
> >> inflating: pil/t1.py
> >> inflating: pil/t2.py
> >> inflating: pil/t3.py
> >> /tmp $ cd pil
> >> /tmp/pil $ make
> >> python t1.py
> >> Found PIL.Image: <module 'PIL.Image' from
> >> '/usr/local/lib/python2.6/site-packages/PIL/Image.pyc'>
> >> python t2.py
> >> Found Image:<module 'Image' from
> >> '/usr/local/lib/python2.6/site-packages/PIL/Image.pyc'>
> >> python t3.py
> >> Found PIL.Image: <module 'PIL.Image' from
> >> '/usr/local/lib/python2.6/site-packages/PIL/Image.pyc'>
> >> Reimported Image: <module 'Image' from
> >> '/usr/local/lib/python2.6/site-packages/PIL/Image.pyc'>
> >>
> >>
> >> Cheers,
> >> ~Josh.
> >>
> >>>> Cheers,
> >>>> ~Josh.
> >>>>
> >>>>
> >>>>> Thank you,
> >>>>> Leon Kolchinsky
> >>>>
> >>>
> >>> Thanks,
> >>> Leon
> >>
> >>
>
>
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