[ome-users] Couple of admin questions

[Leon Kolchinsky]

Hi,


On Tue, Oct 11, 2011 at 20:00, Josh Moore <josh at glencoesoftware.com> wrote:

>
> On Oct 11, 2011, at 6:43 AM, Leon Kolchinsky wrote:
>
> > Hello,
> >
> > 1. How do I run auto "cleanse" job via cron (so it won't ask me for
> username
> > and password)?
> >
> > "$ /srv/omeroserver/bin/omero -s localhost admin cleanse /srv/omerodata"
> -
> > asks for username/pass
> > "$ /srv/omeroserver/bin/omero -s root at localhost admin cleanse
> > /srv/omerodata" - asks for pass
>
> There's currently no way to login passwordlessly, but I've added
> https://trac.openmicroscopy.org.uk/ome/ticket/6957 in order to examine
> adding support for that. Until then, you'll need to follow the recipes on
> the backup-and-restore page:
>
>
> https://www.openmicroscopy.org/site/support/omero4/server/backup-and-restore


Thanks, I'll try that.

>
>
> > 2. Is it possible to include this patch into Omero releases (from Chris
> > Allan):
> >
> http://users.openmicroscopy.org.uk/~cxallan/pil_image_import_inline.patch
> >
> > It solves some client issues for us (python 2.6).
> >
> > This is how I patch OMERO web client:
> > [root at vera144 log]# cd /srv/OMERO.server-Beta-4.3.2/lib/python/
> > [root at vera144 python]# wget
> >
> http://users.openmicroscopy.org.uk/~cxallan/pil_image_import_inline.patch
> > [root at vera144 python]# cp omeroweb/webclient/webclient_gateway.py
> > omeroweb/webclient/webclient_gateway.py.orig
> > [root at vera144 python]# patch -p0 < pil_image_import_inline.patch
> > patching file omeroweb/webclient/webclient_gateway.py
> > [root at vera144 python]# chown omero.omero
> > omeroweb/webclient/webclient_gateway.pyl
>
> Unfortunately, it's still unclear why this patch is only necessary for your
> installation, and therefore, it's likely that adding this would break other
> installations. The import block at the top of that file:
>
> try:
>    from PIL import Image, ImageDraw # see ticket:2597
> except ImportError:
>    try:
>        import Image, ImageDraw # see ticket:2597
>    except:
>        logger.error("You need to install the Python Imaging Library. Get it
> at http://www.pythonware.com/products/pil/")
>        logger.error(traceback.format_exc())
>
> should definitely have already imported "Image". If there are any generic
> fixes you can make to that block so that your installation works without
> Chris' patch, that would be something we could add to the main codebase.
>
Hmm, I'm not a python user myself so it's kinda Chinese for me.
Sorry, I don't have any python skills (except of installing one and it's
modules.....)
Anyway AFAIK, additional "Import" shouldn't break anything in theory.

>
> Cheers,
> ~Josh.
>
>
> > Thank you,
> > Leon Kolchinsky
>

Thanks,
Leon
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