[ome-users] OMERO functionality

[Leon Kolchinsky]

Hello,

On Tue, Nov 1, 2011 at 17:59, jburel <j.burel at dundee.ac.uk> wrote:
> Dear Kim
> On 1 Nov 2011, at 03:29, Kim Linton wrote:
>
>> Hi There,
>>
>> I am a new user of OMERO and have a few quick questions please *hopefully
>> they haven't been answered before*.
>>
>> In relation to groups:
>>
>> 1) if I add images to project data sets while I am in collaboration group
>> - I can only see these images while I am in the collaboration group (not
>> when I am in my private group aswell).
>
> You can only see data of a given group at a time. You can switch between
> groups when you log in or when you are already log in.
>
>> Regardless of which group I am publishing my images to is there a
>> consolidated list somewhere of all my images?
>
> The clients do not offer such view i.e. all the images regardless of the
> group context.

Wouldn't it be a nice feature to add?
Do you have any similar tickets in your system for such a request?
>>
>> 2) If I upload images to the collaboration group I am unable to see these
>> images via the OMERO plug in for ImageJ. Not sure what I am doing wrong
>> here....
>
> You will be able to see the images if the collaborative group is your
> "default" group i.e. when you log in using OMERO.web or OMERO.insight make
> sure that the collaborative group is the one you are logged into.
>>
>> Archive
>> 3) If I upload a file and select the Archive option, should I be able to
>> use the OMERO plug in for ImageJ considering that it saves as the original
>> file type and the OME-TIFF file type?
>>
> You can use the plugin for any images even if the archived button is not
> selected. The plugin uses Bio-Formats to read the data and assumes that you
> already have it i.e. you must have  "loci_tools.jar" in ImageJ/plugins.
>
> Improving  the plugin is something that we will be working on in the coming
> months to offer much more functionalities.
>
> Regards
>
> Jmarie
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>

Cheers,
Leon