[ome-users] lot of files - one image

[Wood, Christopher]

Thanks Will

That looks like what I want  to do.

Chris

From: Will Moore [mailto:will at lifesci.dundee.ac.uk]
Sent: Thursday, June 02, 2011 9:38 AM
To: Wood, Christopher
Cc: jason at lifesci.dundee.ac.uk; ome-users at lists.openmicroscopy.org.uk
Subject: Re: [ome-users] lot of files - one image

Hi Chris,

 Sorry - thought I'd replied to this earlier but sent it to the wrong list....

The Combine Images script should almost do what you want.
Have a look at http://www.openmicroscopy.org/site/support/omero4/getting-started/tutorial/running-scripts/running-util-scripts
and the video demo
http://cvs.openmicroscopy.org.uk/snapshots/movies/omero-4-3/mov/Combine_Images.mov

Although this script was originally designed for combining individual planes, it has been updated (for the approaching 4.3 release) to handle Z-stacks.

If you have each channel as a separate Z-stack then it should do what you want.
But it should be very straight forward to fix it to stitch multi-channel Z-stacks into a time-lapse too, if that's what you need?

  Cheers,

   Will.



On 28 May 2011, at 04:15, Wood, Christopher wrote:


Part of the same 5D image.

Chris
________________________________________
From: Jason Swedlow [jason at lifesci.dundee.ac.uk<mailto:jason at lifesci.dundee.ac.uk>]
Sent: Friday, May 27, 2011 5:10 PM
To: Wood, Christopher; ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>
Subject: Re: [ome-users] lot of files - one image

Hi Chris-

Just to clarify--

Are the 500 images (in your example) part of the same 5D image?  That is, are the samples across Z, C, T etc.?  Or are they, say of different cells, different experiments, etc.

Thanks!

Cheers,

Jason

Wellcome Trust Centre for Gene Regulation & Expression | University of Dundee | http://gre.lifesci.dundee.ac.uk/staff/jason_swedlow.html

-----Original Message-----
From: "Wood, Christopher" <CJW at stowers.org<mailto:CJW at stowers.org>>
Sender: ome-users-bounces at lists.openmicroscopy.org.uk<mailto:ome-users-bounces at lists.openmicroscopy.org.uk>
Date: Fri, 27 May 2011 15:26:04
To: ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk><ome-users at lists.openmicroscopy.org.uk<mailto:ome-users at lists.openmicroscopy.org.uk>>
Subject: [ome-users] lot of files - one image

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William Moore
Wellcome Trust Centre for Gene Regulation & Expression
College of Life Sciences
MSI/WTB/JBC Complex
University of Dundee
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Dundee  DD1 5EH
United Kingdom

Phone 01382 386364
http://openmicroscopy.org





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