[ome-users] Installation under Windows server 2008
Anatole Chessel
ac744 at cam.ac.uk
Thu Feb 17 14:56:05 GMT 2011
Well that is a weird one: i tried again, this time I removed the OMERO
folder entirely and created it again, and it worked... I don't see why
it would not work before (as I should have given all right to everyone)
or why OMERO diagnostics would not detect the problem, but anyway...
Last question (before the next...): are there plans to support omero.fs
on windows server 2008/vista at some point in the future?
Thanks a lot for the help,
A
On 17/02/2011 08:02, Josh Moore wrote:
> Hi Anatole,
>
> sorry, I didn't realize this hadn't gone to the list, so I'm forwarding it now for you to get other reports from Windows Server 2008 users. At the same time, could you possibly send the output of "bin\omero config get" or the file etc\grid\config.xml itself, after removing any sensitive passwords? The contents of E:\\OMERO certainly look correct, but somewhere something's going oddly wrong.
>
> Cheers,
> ~Josh.
>
> On Feb 15, 2011, at 4:43 PM, Anatole Chessel wrote:
>
>> HI, thanks for your quick response...
>>
>> the contents of E:\\OMERO:
>>
>> PS E:\OMERO> ls -recurse
>>
>>
>> Directory: E:\OMERO
>>
>>
>> Mode LastWriteTime Length Name
>> ---- ------------- ------ ----
>> d---- 14/02/2011 18:33 FullText
>>
>>
>> Directory: E:\OMERO\FullText
>>
>>
>> Mode LastWriteTime Length Name
>> ---- ------------- ------ ----
>> -a--- 14/02/2011 18:33 20 segments.gen
>> -a--- 14/02/2011 18:33 0 segments_1
>>
>>
>> The permissions seems ok: this is from a shell run as administrator from an administrator account, which would both have all right. I verified than I can write stuff, with both shells. I tried giving Everyone all right to E:\\OMERO as a test and it did not seems to change anything.
>>
>> Hum, am I the first one to try and install omero on windows server 2008 or are there report of successful installations (that would reassure me)?
>>
>> Thanks again,
>>
>> A.
>>
>> On 15/02/2011 14:26, Josh Moore wrote:
>>> Hi Anatole,
>>>
>>> What are the contents of the E:\OMERO directory? Your logs say:
>>>
>>> Index directory not found, creating: 'E:\OMERO\FullText'
>>>
>>> but then fail to read from that directory:
>>>
>>> Caused by: org.hibernate.search.SearchException: Unable to open Lucene IndexReader
>>>
>>> This could well still be a permissions issue. If so, our check for writability:
>>>
>>> OMERO data dir: 'E:\\OMERO' Exists? True Is writable? True
>>>
>>> is somehow not detecting your setup properly, and it would be very helpful
>>> if we could track that down.
>>>
>>> Cheers,
>>> ~Josh.
>>>
>>>
>>> On Feb 15, 2011, at 3:05 PM, Anatole Chessel wrote:
>>>
>>>> Dear all,
>>>>
>>>> I seem to encounter problems trying to install an omero server under windows server 2008.
>>>>
>>>> First I run into the 'pywintypes.error: (5, 'OpenSCManager', 'Access is denied.')' error signaled elsewhere (http://www.openmicroscopy.org/community/viewtopic.php?f=5&t=586). I managed to get pass that by running the prompt as administrator (right-click->run as administrator) (which seems to be different from running it from an administrator account, more like a sudo I guess). If somebody have a better solution, it might be what cause the errors below...
>>>>
>>>> I think I have all the prerequisites right, however the server fail to start properly... Two logs are attached, I am not sure what to make of them; below is the result of the 'start' and 'diagnostics' commands.
>>>>
>>>> I looked for info on omero on windows server 2008 but could not find anything special; is anybody running it? Is there any plan for an 'official' support? Last question, it seems omero.fs is not running (W. server 2008 is recognized as Vista, which does not support that feature); are there any plan for that? I guess I certainly would not be against (to say the least) running a linux server, but I may have to stick to windows for this one...
>>>>
>>>> Thank you very much for your help...
>>>>
>>>>
>>>>
>>>> PS C:\Users\omero\Desktop\OMERO.server-Beta-4.2.2> .\bin\omero admin start
>>>> No descriptor given. Using etc\grid\windefault.xml
>>>> [SC] CreateService SUCCESS
>>>>
>>>>
>>>> SERVICE_NAME: OMERO.master
>>>> TYPE : 10 WIN32_OWN_PROCESS
>>>> STATE : 2 START_PENDING
>>>> (NOT_STOPPABLE, NOT_PAUSABLE, IGNORES_SHUTDOWN)
>>>> WIN32_EXIT_CODE : 0 (0x0)
>>>> SERVICE_EXIT_CODE : 0 (0x0)
>>>> CHECKPOINT : 0x0
>>>> WAIT_HINT : 0x7d0
>>>> PID : 5756
>>>> FLAGS :
>>>>
>>>> Waiting on startup. Use CTRL-C to exit
>>>> .............................
>>>> Failed to startup some components after 5 minutes
>>>> Calling "stop" on remaining components
>>>>
>>>> SERVICE_NAME: OMERO.master
>>>> TYPE : 10 WIN32_OWN_PROCESS
>>>> STATE : 4 RUNNING
>>>> (STOPPABLE, NOT_PAUSABLE, ACCEPTS_SHUTDOWN)
>>>> WIN32_EXIT_CODE : 0 (0x0)
>>>> SERVICE_EXIT_CODE : 0 (0x0)
>>>> CHECKPOINT : 0x0
>>>> WAIT_HINT : 0x0
>>>>
>>>> [SC] DeleteService SUCCESS
>>>>
>>>> Waiting on shutdown. Use CTRL-C to exit
>>>> ..PS C:\Users\omero\Desktop\OMERO.server-Beta-4.2.2>
>>>>
>>>> PS C:\Users\omero\Desktop\OMERO.server-Beta-4.2.2> .\bin\omero admin diagnostics
>>>>
>>>> ================================================================================
>>>> OMERO Diagnostics Beta4.2.2-r8718-Beta4.2-b56
>>>> ================================================================================
>>>>
>>>> Commands: java -version 1.6.0 (C:\Windows\system32\java.EXE)
>>>> Commands: python -V 2.5.5 (C:\Python25\python.EXE)
>>>> Commands: icegridnode --version 3.3.1 (C:\Ice-3.3.1\bin\icegridnode.EXE)
>>>> Commands: icegridadmin --version 3.3.1 (C:\Ice-3.3.1\bin\icegridadmin.EXE)
>>>> Commands: psql --version not found
>>>>
>>>> Server: icegridnode not started
>>>>
>>>> Log dir: C:\Users\omero\Desktop\OMERO.server-Beta-4.2.2\var\log exists
>>>>
>>>> Log files: Blitz-0.log 41.0 KB errors=2 warnings=10
>>>> Log files: DropBox.log 1.0 KB errors=4 warnings=0
>>>> Log files: FileServer.log 0.0 KB
>>>> Log files: Indexer-0.log 57.0 KB errors=2 warnings=9
>>>> Log files: MonitorServer.log 2.0 KB errors=2 warnings=0
>>>> Log files: OMEROweb.log 0.0 KB
>>>> Log files: Processor-0.log 62.0 KB errors=17 warnings=119
>>>> Log files: Tables-0.log n/a
>>>> Log files: TestDropBox.log n/a
>>>> Log files: master.err 0.0 KB
>>>> Log files: master.out 0.0 KB
>>>> Log files: Total size 0.17 MB
>>>>
>>>> Parsing Blitz-0.log:[line:104] Did you create your omero.data.dir? E.g. /OMERO
>>>>
>>>> Environment:OMERO_HOME=(unset)
>>>> Environment:OMERO_NODE=(unset)
>>>> Environment:OMERO_MASTER=(unset)
>>>> Environment:PATH=C:\Windows\system32\WindowsPowerShell\v1.0\;'C:\Program Files (x86)\Java\jre6\bin\';C:\Python25\;C:\Win
>>>> dows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Ice-3.3.1\bin
>>>> Environment:ICE_HOME=(unset)
>>>> Environment:LD_LIBRARY_PATH=(unset)
>>>> Environment:DYLD_LIBRARY_PATH=(unset)
>>>>
>>>> OMERO data dir: 'E:\\OMERO' Exists? True Is writable? True
>>>> OMERO.web status... [NOT STARTED]
>>>> PS C:\Users\omero\Desktop\OMERO.server-Beta-4.2.2>
>> --
>> Anatole Chessel
>> Research associate
>> The Gurdon Institute
>> University of Cambridge
>> Tennis Court Road, Cambridge CB2 1QN
>> tel: +44 (0)1223 767197
>>
>
--
Anatole Chessel
Research associate
The Gurdon Institute
University of Cambridge
Tennis Court Road, Cambridge CB2 1QN
tel: +44 (0)1223 767197
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