[ome-users] Problem running omero configuration

[Leon Kolchinsky]

Hello,

I've installed all prerequisits for omero according to
http://www.openmicroscopy.org/site/support/omero4/server/installation

Please see below output of - /srv/omeroserver/bin/omero config set
omero.db.name 'omero'

Ice installed using yum according to
http://www.zeroc.com/download_3_3_1.html.

I'm running RHEL5.7

Any help greatly appreciated.

[omero at vera143 ~]$ echo $PATH
/usr/kerberos/bin:/usr/local/bin:/bin:/usr/bin:/usr/lib64/python2.4/site-packages/Ice/:/usr/lib64/python2.4/site-packages/tables:/srv/PostgresPlus/9.0SS/bin/:/srv/PostgresPlus/9.0SS/pgAdmin3/bin:/srv/omeroserver/bin

[omero at vera143 ~]$ export
PYTHONPATH=/usr/lib64/python2.4:/usr/lib64/python2.4/site-packages/Ice/:/usr/lib64/python2.4/site-packages/tables

[omero at vera143 ~]$ /srv/omeroserver/bin/omero config set omero.db.name'omero'
Error loading: /srv/omeroserver/lib/python/omero/plugins/prefs.py
Traceback (most recent call last):
  File "/srv/omeroserver/lib/python/omero/cli.py", line 1115, in loadpath
    execfile( str(pathobj), loc )
  File "/srv/omeroserver/lib/python/omero/plugins/prefs.py", line 22, in ?
    from omero.config import ConfigXml
  File "/srv/omeroserver/lib/python/omero/config.py", line 31, in ?
    from elementtree.ElementTree import XML, Element, SubElement, Comment,
ElementTree, tostring
  File "/usr/lib/python2.4/site-packages/elementtree/ElementTree.py", line
755, in ?
    _escape = re.compile(eval(r'u"[&<>\"\u0080-\uffff]+"'))
  File "/usr/lib64/python2.4/sre.py", line 180, in compile
    return _compile(pattern, flags)
  File "/usr/lib64/python2.4/sre.py", line 225, in _compile
    p = sre_compile.compile(pattern, flags)
  File "/usr/lib64/python2.4/sre_compile.py", line 500, in compile
    code = _code(p, flags)
  File "/usr/lib64/python2.4/sre_compile.py", line 484, in _code
    _compile(code, p.data, flags)
  File "/usr/lib64/python2.4/sre_compile.py", line 77, in _compile
    _compile(code, av[2], flags)
  File "/usr/lib64/python2.4/sre_compile.py", line 52, in _compile
    _compile_charset(av, flags, code, fixup)
  File "/usr/lib64/python2.4/sre_compile.py", line 178, in _compile_charset
    for op, av in _optimize_charset(charset, fixup):
  File "/usr/lib64/python2.4/sre_compile.py", line 221, in _optimize_charset
    return _optimize_unicode(charset, fixup)
  File "/usr/lib64/python2.4/sre_compile.py", line 341, in _optimize_unicode
    mapping = array.array('b', mapping).tostring()
AttributeError: 'module' object has no attribute 'array'
Error loading: /srv/omeroserver/lib/python/omero/plugins/node.py
Traceback (most recent call last):
  File "/srv/omeroserver/lib/python/omero/cli.py", line 1115, in loadpath
    execfile( str(pathobj), loc )
  File "/srv/omeroserver/lib/python/omero/plugins/node.py", line 17, in ?
    from omero.plugins.admin import AdminControl
  File "/srv/omeroserver/lib/python/omero/plugins/admin.py", line 27, in ?
    import omero.config
  File "/srv/omeroserver/lib/python/omero/config.py", line 31, in ?
    from elementtree.ElementTree import XML, Element, SubElement, Comment,
ElementTree, tostring
  File "/usr/lib/python2.4/site-packages/elementtree/ElementTree.py", line
755, in ?
    _escape = re.compile(eval(r'u"[&<>\"\u0080-\uffff]+"'))
  File "/usr/lib64/python2.4/sre.py", line 180, in compile
    return _compile(pattern, flags)
  File "/usr/lib64/python2.4/sre.py", line 225, in _compile
    p = sre_compile.compile(pattern, flags)
  File "/usr/lib64/python2.4/sre_compile.py", line 500, in compile
    code = _code(p, flags)
  File "/usr/lib64/python2.4/sre_compile.py", line 484, in _code
    _compile(code, p.data, flags)
  File "/usr/lib64/python2.4/sre_compile.py", line 77, in _compile
    _compile(code, av[2], flags)
  File "/usr/lib64/python2.4/sre_compile.py", line 52, in _compile
    _compile_charset(av, flags, code, fixup)
  File "/usr/lib64/python2.4/sre_compile.py", line 178, in _compile_charset
    for op, av in _optimize_charset(charset, fixup):
  File "/usr/lib64/python2.4/sre_compile.py", line 221, in _optimize_charset
    return _optimize_unicode(charset, fixup)
  File "/usr/lib64/python2.4/sre_compile.py", line 341, in _optimize_unicode
    mapping = array.array('b', mapping).tostring()
AttributeError: 'module' object has no attribute 'array'
Error loading: /srv/omeroserver/lib/python/omero/plugins/admin.py
Traceback (most recent call last):
  File "/srv/omeroserver/lib/python/omero/cli.py", line 1115, in loadpath
    execfile( str(pathobj), loc )
  File "/srv/omeroserver/lib/python/omero/plugins/admin.py", line 27, in ?
    import omero.config
  File "/srv/omeroserver/lib/python/omero/config.py", line 31, in ?
    from elementtree.ElementTree import XML, Element, SubElement, Comment,
ElementTree, tostring
  File "/usr/lib/python2.4/site-packages/elementtree/ElementTree.py", line
755, in ?
    _escape = re.compile(eval(r'u"[&<>\"\u0080-\uffff]+"'))
  File "/usr/lib64/python2.4/sre.py", line 180, in compile
    return _compile(pattern, flags)
  File "/usr/lib64/python2.4/sre.py", line 225, in _compile
    p = sre_compile.compile(pattern, flags)
  File "/usr/lib64/python2.4/sre_compile.py", line 500, in compile
    code = _code(p, flags)
  File "/usr/lib64/python2.4/sre_compile.py", line 484, in _code
    _compile(code, p.data, flags)
  File "/usr/lib64/python2.4/sre_compile.py", line 77, in _compile
    _compile(code, av[2], flags)
  File "/usr/lib64/python2.4/sre_compile.py", line 52, in _compile
    _compile_charset(av, flags, code, fixup)
  File "/usr/lib64/python2.4/sre_compile.py", line 178, in _compile_charset
    for op, av in _optimize_charset(charset, fixup):
  File "/usr/lib64/python2.4/sre_compile.py", line 221, in _optimize_charset
    return _optimize_unicode(charset, fixup)
  File "/usr/lib64/python2.4/sre_compile.py", line 341, in _optimize_unicode
    mapping = array.array('b', mapping).tostring()
AttributeError: 'module' object has no attribute 'array'
usage: /srv/omeroserver/bin/omero [-h] [-v] [-d DEBUG] [--path PATH] [-C]
                                  [-s SERVER] [-p PORT] [-g GROUP] [-u USER]
                                  [-w PASSWORD] [-k KEY]
                                  <subcommand> ...
/srv/omeroserver/bin/omero: error: argument <subcommand>: invalid choice:
'config'

choose from:
        cecog, db, delete, download, export, group, help, hql, import,
        ldap, load, login, logout, perf, quit, script, server, sessions,
        shell, testengine, upload, user, version, web


Cheers,
Leon Kolchinsky
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