[ome-users] OME-TIF Batch Export

[Will Moore]

Hi Christophe,

The limitation on exporting OME-TIFF is really just the processing  
required on the server to generate the files, since this requires a  
lot of database traversing and moving data around.

We are currently experimenting with adding OME-TIFF support to the  
Batch_Image_Export script.
This should address the functionality you want, but it will need some  
assessment to see how the server holds up when batch exporting large  
numbers of images.

The other issue is that the script currently runs on Datasets of  
images (or Images identified by ID), but you'd presumably want to  
specify a Plate of Images?


   Will.


On 3 Aug 2011, at 16:00, Christophe TREFOIS wrote:

> Dear Ome’s (is that correct?),
>
> I read on some forums that there is no batch export for OME-TIF and  
> I also only found a batch export for PNG or JPG.
>
> Is there a specific reason for that?
> More specifically, does anyone of you have any experience with this?
>
> We would like to use OMERO with HCS data (Opera). Mass Import AND  
> Export therefor becomes a necessity.
>
> Thanks for any help,
>
> --
> Christophe
> ................................................................................
> Dipl.-Ing. Christophe TREFOIS
> PhD Student
> Ing. Sys. Com. Dipl. EPF
>
> <image001.jpg>
> Luxembourg Centre for Systems Biomedicine
>
> UNIVERSITY OF LUXEMBOURG
> CAMPUS LIMPERTSBERG
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>
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William Moore
Wellcome Trust Centre for Gene Regulation & Expression
College of Life Sciences
MSI/WTB/JBC Complex
University of Dundee
Dow Street
Dundee  DD1 5EH
United Kingdom

Phone 01382 386364
http://openmicroscopy.org





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