[ome-users] Another newbie question - why won't Omero web come up?
Chris Allan
callan at lifesci.dundee.ac.uk
Thu Jun 3 08:50:59 BST 2010
Do you still have ICE 3.4.0 in the PYTHONPATH? I would resolve that first before moving forward with this, it's likely to be the problem here as well.
-Chris
On 26 May 2010, at 06:14, Taylor, Ronald C wrote:
> Hello Ola,
>
> I have (finally) tried what you suggested after being away from the install for several days. That is, I did this:
>
> 1) I altered the
> templates.xml file
>
> by adding the line
>
> <option>130.20.186.103:8000</option>
>
> for where the machine (sidney.pnl.gov) where OMERO is installed.
>
> 2) I altered the
> server.py file
>
> by changing one line to this:
>
> django = ["python","manage.py","runserver","130.20.186.103:8000","--noreload"]+list(args)
>
> I then started OMERO using
>
> omero admin start
>
> and started the web server using
>
> omero admin ice
> >> enable server
> >> start server
>
> Unfortunately, the server still does not come up properly when I type in my browser this address:
> http://sidney.pnl.gov:8000 <ret>
> or
> http://130.20.186.103:8000 <ret>
>
> However, I do get something - a traceback, rather than the browser saying that it could not find any such address. So I suppose that is progress of a sort. Here is the page of text that the browser returns using either of the above addresses:
>
> "Traceback (most recent call last):
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/core/servers/basehttp.py", line 277, in run
> self.result = application(self.environ, self.start_response)
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/core/servers/basehttp.py", line 634, in __call__
> return self.application(environ, start_response)
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/core/handlers/wsgi.py", line 239, in __call__
> response = self.get_response(request)
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/core/handlers/base.py", line 116, in get_response
> return self.handle_uncaught_exception(request, resolver, sys.exc_info())
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/core/handlers/base.py", line 160, in handle_uncaught_exception
> return callback(request, **param_dict)
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/feedback/views.py", line 109, in handler500
> return custom_server_error(request, error500)
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/feedback/views.py", line 97, in custom_server_error
> return HttpResponse(t.render(c))
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/template/__init__.py", line 176, in render
> return self.nodelist.render(context)
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/template/__init__.py", line 768, in render
> bits.append(self.render_node(node, context))
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/template/__init__.py", line 781, in render_node
> return node.render(context)
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/template/loader_tags.py", line 97, in render
> return compiled_parent.render(context)
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/template/__init__.py", line 176, in render
> return self.nodelist.render(context)
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/template/__init__.py", line 768, in render
> bits.append(self.render_node(node, context))
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/template/__init__.py", line 781, in render_node
> return node.render(context)
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/template/defaulttags.py", line 378, in render
> args=args, kwargs=kwargs)
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/core/urlresolvers.py", line 252, in reverse
> *args, **kwargs)))
>
> File "/sid/Omero/Omero_install/omero_dist/lib/python/django/core/urlresolvers.py", line 241, in reverse
> "arguments '%s' not found." % (lookup_view, args, kwargs))
>
> NoReverseMatch: Reverse for 'omeroweb.webstatic' with arguments '(u'css/layout.css',)' and keyword arguments '{}' not found."
>
> %%%%%%%%%%%%%%%%%%%%%
>
> Alas, I'm not a Python programmer. But perhaps the last line is the key to the error report? Could anybody give me some guidance as to what I should try next to bring up the OMERO web server?
>
> - Ron
>
> ___________________________________________
> Ronald Taylor, Ph.D.
> Computational Biology & Bioinformatics Group
> Pacific Northwest National Laboratory
> 902 Battelle Boulevard
> P.O. Box 999, Mail Stop J4-33
> Richland, WA 99352 USA
> Office: 509-372-6568
> Email: ronald.taylor at pnl.gov
>
>
>
> From: Aleksandra Tarkowska [mailto:aleksandrat at lifesci.dundee.ac.uk]
> Sent: Thursday, May 13, 2010 8:32 AM
> To: Taylor, Ronald C
> Cc: 'ome-users at lists.openmicroscopy.org.uk'; ronald.taylor24 at gmail.com
> Subject: Re: [ome-users] Another newbie question - why won't Omero web come up?
>
> Hi Ronald
>
> It looks like the webserver started successfully.
>
> I suspect you require to configure the out of the box setup to listen for webadmin and webclient connections on different host configure the following:
> • Configure the following in ~/Desktop/omero/etc/grid/templates.xml by adding after --noreload:
>
> <server-template id="WebTemplate">
> <parameter name="act" default="on-demand"/>
> <server id="Web" exe="python" activation="${act}" pwd="${OMEROPY_HOME}omeroweb">
> <option>manage.py</option>
> <option>runserver</option>
> <option>--noreload</option>
> <option>0.0.0.0:8000</option><!-- your ip & port here -->
> <env>${PYTHONPATH}</env>
> <adapter name="WebAdapter" register-process="true" endpoints="tcp" server-lifetime="false"/>
> </server>
> </server-template>
>
> In your ~/Desktop/omero/lib/python/omero/plugins/ directory configure the following in server.py:
>
> django = ["python","manage.py","runserver","0.0.0.0:8000","--noreload"]+list(args)
> Thanks
> Ola
>
>
> On 12 May 2010, at 00:00, Taylor, Ronald C wrote:
>
>>
>>
>> Hello,
>>
>> In addition to my problem about the Omero Java client not coming up (see separate, earlier email), I also cannot get the Omero web server to come up on port 8000 on my desktop (sidney.pnl.gov). So I could also use some help with that.
>>
>> Omero web settings were set like so - which appeared to work fine:
>>
>> sidney85% omero web settings
>>
>> Please enter the domain you want to run OMERO.web on (http://www.domain.com:8000/):http://sidney.pnl.gov:8000
>> Please enter the Email address you want to send from (omero_admin at example.com): ronald.taylor at pnl.gov Please enter the SMTP server host you want to send from (smtp.example.com): mailhost.emsl.pnl.gov
>> Optional: please enter the SMTP server port (default 25):
>> Optional: Please enter the SMTP server username:
>> Optional: Password:
>>
>> Optional: TSL? (yes/no):
>> Saved to /sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/custom_settings.py
>>
>>
>> Please enter Username for OMERO.web administrator: rtaylor Please enter Email address: ronald.taylor at pnl.gov Please enter password for OMERO.web administrator: r*****9
>>
>> Please re-enter password for OMERO.web administrator: r*****9
>>
>> <string>:36: DeprecationWarning: the sha module is deprecated; use the hashlib module instead Saved to /sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/initial_data.json
>>
>>
>> Database synchronization...
>>
>> Creating table django_admin_log
>> Creating table auth_permission
>> Creating table auth_group
>> Creating table auth_user
>> Creating table auth_message
>> Creating table django_content_type
>> Creating table django_session
>> Creating table django_site
>> Creating table feedback_emailtemplate
>> Creating table webadmin_gateway
>> Installing index for admin.LogEntry model Installing index for auth.Permission model Installing index for auth.Message model Installing json fixture 'initial_data' from absolute path.
>> Installed 2 object(s) from 1 fixture(s)
>> OMERO.web was configured successful. Please start the application.
>>
>> sidney86%
>>
>> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
>>
>> I next invoked ICE and started the OMERO web server, like so:
>>
>>
>> sidney294% omero admin ice
>> Ice 3.4.0 Copyright 2003-2010 ZeroC, Inc.
>> >>> server enable web
>> error: couldn't find server `web'
>> >>>
>> >>> server enable Web
>> >>>
>> >>> server start Web
>> >>>
>> >>> server state Web
>> active (pid = 7269, enabled)
>> >>>
>> >>> exit
>> sidney295%
>> sidney295%
>>
>>
>> That appeared to work OK, too. I also checked on port 8000 - it is open.
>>
>> However, when I point my browser to
>>
>> http://sidney.pnl.gov:8000
>>
>> My browser says that it connot connect. What is going wrong?
>>
>> - Ron Taylor
>>
>> PS - Though I gave the results of a "omero adimin diagnostics" run in the earlier email, I repeat it here at bottom for easy reference.
>>
>>
>> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
>>
>> Diagnostic run:
>>
>> sidney87% omero admin diagnostics
>>
>> ================================================================================
>> OMERO Diagnostics Beta-4.1.1-r5927-b91
>> ================================================================================
>>
>> Commands: java -version 1.6.0 (/msrc/apps/jdk_1.6/bin/java -- 2 others)
>> Commands: python -V 2.6.5 (/sid/Omero/Python/bin/python -- 2 others)
>> Commands: icegridnode --version 3.4.0 (/sid/Omero/Ice/Ice-3.4.0/bin/icegridnode)
>> Commands: icegridadmin --version 3.4.0 (/sid/Omero/Ice/Ice-3.4.0/bin/icegridadmin)
>> Commands: psql --version 8.3.10 (/sid/Omero/Postgres/8.3/bin/psql)
>>
>> Server: icegridnode running
>> Server: Blitz-0 active (pid = 7016, enabled)
>> Server: DropBox inactive (disabled)
>> Server: FSServer active (pid = 7029, enabled)
>> Server: Indexer-0 active (pid = 7031, enabled)
>> Server: OMERO.Glacier2 active (pid = 7034, enabled)
>> Server: OMERO.IceStorm inactive (disabled)
>> Server: Processor-0 inactive (disabled)
>> Server: Tables-0 inactive (disabled)
>> Server: TestDropBox inactive (enabled)
>> Server: Web active (pid = 7774, enabled)
>>
>> Log dir: /sid/Omero/Omero_install/omero_dist/var/log exists
>>
>> Log files: Blitz-0.log 44.0 KB errors=2 warnings=34
>> Log files: DropBox.log n/a
>> Log files: FSServer.log 2.0 KB errors=0 warnings=12
>> Log files: Indexer-0.log 3.0 KB errors=0 warnings=2
>> Log files: OMEROweb.log 0.0 KB
>> Log files: OMEROweb.log.2010-05-11 0.0 KB
>> Log files: Processor-0.log n/a
>> Log files: Tables-0.log n/a
>> Log files: TestDropBox.log n/a
>> Log files: master.err 6.0 KB errors=0 warnings=4
>> Log files: master.out 0.0 KB
>> Log files: Total size 0.06 MB
>> sidney88%
>>
>>
>> I also set the Omero web parameters, like so:
>>
>> sidney85% omero web settings
>>
>> Please enter the domain you want to run OMERO.web on (http://www.domain.com:8000/):http://sidney.pnl.gov:8000
>> Please enter the Email address you want to send from (omero_admin at example.com): ronald.taylor at pnl.gov Please enter the SMTP server host you want to send from (smtp.example.com): mailhost.emsl.pnl.gov
>> Optional: please enter the SMTP server port (default 25):
>> Optional: Please enter the SMTP server username:
>> Optional: Password:
>>
>> Optional: TSL? (yes/no):
>> Saved to /sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/custom_settings.py
>>
>>
>> Please enter Username for OMERO.web administrator: rtaylor
>> Please enter Email address: ronald.taylor at pnl.gov
>> Please enter password for OMERO.web administrator: r*****9
>>
>> Please re-enter password for OMERO.web administrator: r*****9
>>
>> <string>:36: DeprecationWarning: the sha module is deprecated; use the hashlib module instead
>> Saved to /sid/Omero/Omero_install/omero_dist/lib/python/omeroweb/initial_data.json
>>
>>
>> Database synchronization...
>>
>> Creating table django_admin_log
>> Creating table auth_permission
>> Creating table auth_group
>> Creating table auth_user
>> Creating table auth_message
>> Creating table django_content_type
>> Creating table django_session
>> Creating table django_site
>> Creating table feedback_emailtemplate
>> Creating table webadmin_gateway
>> Installing index for admin.LogEntry model Installing index for auth.Permission model Installing index for auth.Message model Installing json fixture 'initial_data' from absolute path.
>> Installed 2 object(s) from 1 fixture(s)
>> OMERO.web was configured successful. Please start the application.
>>
>> sidney86%
>>
>> %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
>>
>> ___________________________________________
>> Ronald Taylor, Ph.D.
>> Computational Biology & Bioinformatics Group
>> Pacific Northwest National Laboratory
>> 902 Battelle Boulevard
>> P.O. Box 999, Mail Stop J4-33
>> Richland, WA 99352 USA
>> Office: 509-372-6568
>> Email: ronald.taylor at pnl.gov
>>
>>
>> _______________________________________________
>> ome-users mailing list
>> ome-users at lists.openmicroscopy.org.uk
>> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
>
> Thanks
> Ola
>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
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