[ome-users] Problematic OME-TIFF file

[Jason Swedlow]

Hi All-

Thanks for this feedback.

 From our experience, this size should cause a problem.  In our  
testing, we imported multi-plane OME-TIFF's that were much larger,  
with no problem.

The best bet is to use qa.openmicroscopy.org.uk, and we'll take a look  
at the file.

Cheers,

Jason


On 22 Oct 2009, at 22:26, Woodbridge, Mark R wrote:

> It’s about 100MB, but same problem seems to affect upload of (for  
> example) multi-image-pixels.ome.tif from http://www.loci.wisc.edu/ome/ome-tiff-data.html 
>  which is about 10MB so looks like a more general problem with some  
> types of OME-TIFF.
>
> But, more generally, Beta4.1 is looking good – many thanks to the  
> OMERO developers! All our other file formats have uploaded  
> successfully, including some which have only been supported since  
> this new release. Other large files haven’t presented a problem  
> either.
>
> Mark.
>
> From: David Gutman [mailto:dagutman at gmail.com]
> Sent: 22 October 2009 21:16
> To: Woodbridge, Mark R
> Cc: ome-users at lists.openmicroscopy.org.uk
> Subject: Re: [ome-users] Problematic OME-TIFF file
>
> Mark how big is the image?  I haven't updated to the newer version  
> of OME yet (that's next week's goal) but I would have some images  
> work, and others die depending on file size-- often I would get an  
> error related to ICE timing out, etc...
>
>
> dg
>
> On Thu, Oct 22, 2009 at 3:47 PM, Woodbridge, Mark R <m.woodbridge at imperial.ac.uk 
> > wrote:
> Hi,
>
> I’ve just been trying to upload a set of files to Beta4.1 using the  
> importer. One file causes the Importer to get stuck in a loop where  
> it just says ‘analysing’ until I cancel the import:
>
> http://cisbic.bioinformatics.ic.ac.uk/20090422bead20x_C1.ome.tif
>
> The importer previously refused to import the file. I’m not sure  
> whether this was correct, as the OME-TIFF validator says it’s ok,  
> but previous investigations suggested that the channel order  
> metadata may be wrong. Anyway, it should probably either succeed or  
> fail rather than getting stuck ;-)
>
> Tested with Importer running on Windows and Linux.
>
> Mark.
>
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>
>
>
>
> -- 
> David A Gutman, M.D. Ph.D.
> Center for Comprehensive Informatics
> Emory University School of Medicine
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users



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