[ome-users] Client issues

jburel j.burel at dundee.ac.uk
Tue Mar 10 15:19:51 GMT 2009


Hi Mario

I am currently looking at the bug you sent

Regards
Jmarie
On 10 Mar 2009, at 15:11, Mario Valle wrote:

> (Really I don't know if the list is the correct one, please advise)
>
> So the Beta4 adventure started.
>
> Built the server without big problems (almost...)
>
> Run .insight with a retrieval error, but anyway the db is empty.
>
> So I found a .importer zip file on Hudson and tried it. Besides  
> saying "version 3.1.1",
> it crashes importing a tif file with, seems, an out-of-memory error.  
> Instead the messages
> on the console are much more pacific (see below).
>
> Maybe I should calm down and wait for a RC1 also for the clients,  
> isn't it?
>
> Ciao!
> 	mario
>
>
>
> pazzallo ~/Desktop/OMERO.importer-build1841 > ./importer-gui
> Starting OMERO.importer...
> Suitable java version found [java = 1.5.0_16]
> Configuring environment...
> Java exec found in PATH. Verifying...
> Loading OMERO.importer:
> java -Xmx256m -cp
> "./OmeroImporter.jar:./libs/FontBox.jar:./libs/PDFBox.jar:./libs/ 
> TableLayout.jar:./libs/activation.jar:./libs/ant.jar:./libs/asm- 
> attrs.jar:./libs/asm.jar:./libs/backport-util-concurrent.jar:./libs/ 
> bio-formats.jar:./libs/blitz.jar:./libs/btm.jar:./libs/bufr.jar:./ 
> libs/cglib.jar:./libs/checkstyle.jar:./libs/common.jar:./libs/ 
> commons-beanutils.jar:./libs/commons-codec.jar:./libs/commons- 
> collections.jar:./libs/commons-httpclient.jar:./libs/commons- 
> io.jar:./libs/commons-lang.jar:./libs/commons-logging.jar:./libs/ 
> commons-pool.jar:./libs/dsl.jar:./libs/ehcache.jar:./libs/emma.jar:./ 
> libs/emma_ant.jar:./libs/freemarker.jar:./libs/geronimo-spec- 
> jta.jar:./libs/grib.jar:./libs/hibernate-annotations.jar:./libs/ 
> hibernate-commons-annotations.jar:./libs/hibernate-search.jar:./libs/ 
> hibernate-tools.jar:./libs/hibernate-validator.jar:./libs/ 
> hsqldb.jar:./libs/ice-db.jar:./libs/ice.jar:./libs/ij.jar:./libs/ 
> importer-common.jar:./libs/importer.jar:./libs/ini4j.jar:./libs/ 
> jamon.jar:./libs/java-getop
> t.jar:./libs/jsr107cache.jar:./libs/jtidy.jar:./libs/loci- 
> common.jar:./libs/log4j.jar:./libs/lucene-core.jar:./libs/lucene- 
> highlighter.jar:./libs/lucene-spellchecker.jar:./libs/mail.jar:./ 
> libs/model-psql.jar:./libs/netcdf.jar:./libs/ome-java.jar:./libs/ome- 
> xml.jar:./libs/omero-clients-util.jar:./libs/omero_client.jar:./libs/ 
> persistence-api.jar:./libs/poi-loci.jar:./libs/postgresql.jar:./libs/ 
> quaqua-filechooser-only.jar:./libs/quartz.jar:./libs/rendering.jar:./ 
> libs/romio.jar:./libs/server.jar:./libs/slf4j-api.jar:./libs/slf4j- 
> log4j12.jar:./libs/spring-ldap.jar:./libs/spring.jar:./libs/ 
> swingx.jar:./libs/velocity-tools-generic.jar:./libs/velocity.jar:./ 
> libs/xerces.jar:./libs/xml-apis.jar"
> -Djava.library.path="/Users/mvalle/Desktop/OMERO.importer-build1841"
> ome.formats.importer.Main
> /Users/mvalle/omero/log
> 2009-03-10 15:36:22,186 0          [      main] INFO
> ome.system.UpgradeCheck  - no update needed
>
> Warning: class ch.randelshofer.quaqua.filechooser.Files couldn't  
> load library
> libquaqua.jnilib.
> User Name: mvalle -- Password: **********
> true
> Creating root!
> Tiff
> omero.model.Image:0 == omero.model.ImageI at 15e330,omero.model.Image:0
> omero.model.OriginalFile:0 ==  
> omero.model.OriginalFileI at f69ed3,omero.model.OriginalFile:0
> omero.model.Pixels:0:0 == omero.model.PixelsI at 356db6,Pixels:0
> omero.model.Channel:0:0 ==  
> omero.model.ChannelI at b5f36e,omero.model.Channel:0:0
> omero.model.LogicalChannel:0:0 ==
> omero.model.LogicalChannelI at 80ce9c,omero.model.LogicalChannel:0:0
>
> Starting references....
> Pixels:0 == omero.model.OriginalFile:0
>
> containerCache contains 5 entries.
> referenceCache contains 1 entries.
> Saving pixels id: 1
>
> -- 
> Ing. Mario Valle
> Data Analysis Group                              | http://www.cscs.ch/~mvalle
> Swiss National Supercomputing Centre (CSCS)      | Tel:  +41 (91)  
> 610.82.60
> v. Cantonale Galleria 2, 6928 Manno, Switzerland | Fax:  +41 (91)  
> 610.82.82
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
> http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users




More information about the ome-users mailing list