[ome-users] webadmin login

josh.moore at gmx.de josh.moore at gmx.de
Fri Jun 26 08:15:55 BST 2009


Gordon W. Laurie writes:
 > Dear Josh:

Hi Gordon.

 > Thanks.  The password is not omero.  I rec'd the message below.
 > 
 > Looking into pgAdmin III under properties, it appears that postgreS is not 
 > connected.
 > 
 > I wonder if it is best if I start from scratch.  Instead of using
 > Alex's directions, I go with the official OMERO.server
 > installation.  My uncertainty is getting the Environment Variables
 > correct.

I think you're doing quite well. Just missing a step. In one of your
previous messages you posted this:

d-128-15-155:~ gordonlaurie$ export PATH=/opt/Ice-3.3/bin:$PATH
d-128-15-155:~ gordonlaurie$ export 
DYLD_LIBRARY_PATH=/opt/Ice-3.3/lib:$DYLD_LIBRARY_PATH
d-128-15-155:~ gordonlaurie$ export 
PYTHONPATH=/opt/Ice-3.3/python:$PYTHONPATH
d-128-15-155:~ gordonlaurie$ export 
CLASSPATH=/opt/Ice-3.3/lib/Ice.jar:$CLASSPATH
d-128-15-155:~ gordonlaurie$ export 
CLASSPATH=/opt/Ice-3.3/lib/db.jar:$CLASSPATHd-128-15-155:~ gordonlaurie$ 
export PYTHONPATH=/usr/share/omero/omero_dist/lib/python/:$PYTHONPATH
d-128-15-155:~ gordonlaurie$ cd /usr/share/omero/omero_dist
d-128-15-155:omero_dist gordonlaurie$ /usr/share/omero/omero_dist/bin/omero 
db script


In order to get "bin/omero config set" to work properly you'll have to
do the following:

  export PATH=/opt/Ice-3.3/bin:$PATH
  export DYLD_LIBRARY_PATH=/opt/Ice-3.3/lib:$DYLD_LIBRARY_PATH
  export PYTHONPATH=/opt/Ice-3.3/python:$PYTHONPATH
  /usr/share/omero/omero_dist/bin/omero config set omero.db.pass YourSecretPassword

In general, to use the "bin/omero" command, you'll always have to set
PATH, DYLD_LIBRARY_PATH, and PYTHONPATH because of how Ice is
installed on your system. You may want to set these permanently in
your environment.

Best wishes,
~Josh.

 > Gordon.
 > 
 > d-128-15-155:omero_dist gordonlaurie$ bin/omero config set omero.db.pass 
 > MySecretPassword
 > Traceback (most recent call last):
 >    File "bin/omero", line 67, in <module>
 >      import omero.cli
 >    File "/usr/share/omero/omero_dist/lib/python/omero/__init__.py", line 14, 
 > in <module>
 >      import Ice, Glacier2
 > ImportError: No module named Ice
 > 
 > 
 > 
 > On Thu, 25 Jun 2009 15:50:12 +0200
 >   josh.moore at gmx.de wrote:
 > > 
 > > > At this point, it's guaranteed that the webclient won't be able to
 > > > connect, since the server couldn't startup. It would help to have:
 > > > 
 > > > zip logs.zip /usr/share/omero/omero_dist/var/log/*
 > > 
 > > In the logs (sent offlist), there's this error message:
 > > 
 > >  Caused by: org.postgresql.util.PSQLException: FATAL: password
 > >  authentication failed for user "omero"
 > > 
 > > If the password is something other than "omero" (hopefully it is!),
 > > did you configure it?
 > > 
 > > bin/omero config set omero.db.pass MySecretPassword
 > > 
 > > Another option would be to use pg_hba.conf to allow passwordless
 > > login. See:
 > > 
 > >  https://www.openmicroscopy.org/site/support/omero4/server/postgresql
 > > 
 > > for more information.
 > > 
 > > Cheers,
 > > ~J.
 > 
 > Gordon W. Laurie, PhD
 > Associate Professor
 > Department of Cell Biology
 > Director, Biotechnology Training Program
 > University of Virginia



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