[ome-users] OMERO Client Exception...

[josh.moore at gmx.de]

Hi Gernot,

sorry for the slow follow up. Are you wanting to do programmatic
import or some other subset of functionality? The bare minimum is
simply the omero_client.jar. However, import does add several
dependencies for file parsing. The easiest path might be to add an ivy
configuration and a build target which packs all the jars up.

See the "retrieve-client-libs" target in OmeroImporter/build.xml. That
uses the "client" conf from OmeroImporter/ivy.xml, but another one,
e.g. "minimal", could be defined so:

    <!-- Loci -->
    <dependency org="OME" name="bio-formats"
        rev="${versions.bio-formats}"
        conf="build,client,minimal->default"/>
    ...

Note: "build,client->default" is the default configuration and so must
be included.

Best wishes,
~Josh.


Gernot Stocker writes:
 > there was one jar file missing >;-) (importer_common.jar). Is there a way to find 
 > out the minimal set of jars which are REALLY necessary for programmatic/textonly 
 > access?
 > 
 > Under
 >   http://trac.openmicroscopy.org.uk/omero/wiki/OmeroJava 
 > 
 > is described that in 
 >   http://trac.openmicroscopy.org.uk/omero/browser/trunk/components/tools/OmeroImporter/ivy.xml
 > 
 > one can find the extended classpath but there are some which are definitely not
 > necessary e.g. quaqua-filechooser-only, TableLayout ...
 > 
 > >[...]
 > > > 
 > > > Do you have an idea what could be the reason for this signature mismatch?
 > > 
 > > I've tried to reproduce this and I can't. Is it possible you have
 > > CLASSPATH issues that are a result of your Tomcat/Spring container? Can
 > > you get an OMEROMetadataStoreClient instance using any of the other
 > > constructors?
 > 
 > Now also this constructor is working fine and the hint with the sudo session 
 > helped me a lot!
 > Thanks,
 >     Gernot
 > -- 
 > Gernot Stocker,
 > Institute for Genomics and Bioinformatics(IGB)
 > Petersgasse 14, 8010 Graz, Austria
 > Tel.: +43-316-873-5345
 > http://genome.tugraz.at
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