[ome-users] LIF format - metadata

[Will Moore]

Hi Mark,

Thanks very much for that.

Very handy!

   Cheers,

   Will.



On 20 Jul 2009, at 14:37, Woodbridge, Mark R wrote:

> Hi,
>
> Leica’s free LAS AF Lite software can open .lif files:
>
> ftp://ftp.llt.de/softlib/LAS_AF_Lite
>
> The Bio-Formats homepage links to free software for various imaging  
> formats:
>
> http://www.loci.wisc.edu/ome/formats.html
>
> Mark.
>
> From: ome-users-bounces at lists.openmicroscopy.org.uk [mailto:ome- 
> users-bounces at lists.openmicroscopy.org.uk] On Behalf Of Will Moore
> Sent: 20 July 2009 11:37
> To: mallouh at igbmc.fr
> Cc: ome-users at lists.openmicroscopy.org.uk
> Subject: Re: [ome-users] LIF format - metadata
>
> Hi Veronique,
>
> We would like to be able to import all this metadata if possible.
>
> However, it is quite tricky to map the data in the LIF file to our  
> OME data model.
>
> For example, in a sample LIF file I'm looking at (with ImageJ and  
> BioFormats plugin), there appears to be only 1 pin-hole size,  
> whereas our model requires a pin-hole size for each channel.
>
> One problem we have is that we don't know how the LIF files are  
> read and displayed by the Leica software.
> (Do you know of any LIF viewing software that is available to  
> download?)
>
> You could help us a lot by sending us any sample LIF files you  
> have, together with a list of all the metadata you want to view  
> from the files.
> Alternatively, if you could also take a screen-shot of what the  
> files look like, and what metadata is displayed in the Leica  
> software, that would allow us to work out how to read this metadata  
> from the file.
>
> If you want details of how to upload sample files to our image  
> repository, please e-mail melissa melissa at glencoesoftware.com
>
>  Many thanks,
>
>   Will.
>
>
> On 20 Jul 2009, at 08:36, V. Mallouh wrote:
>
>
> Hello,
>
> We are importing LIF files in Omero 4.0.3 : it would be very useful  
> to have original metadata (Laser wavelength, Pinhole, PMT, SP  
> Mirror Channel, ...) available in Insight.
> Is it planned to import these informations in Omero?
>
> Best regards,
>
> Véronique Mallouh
> IGBMC
> 1 Rue Laurent Fries
> 67404 Illkirch Cedex
> France
> mallouh at igbmc.fr
>
>
> _______________________________________________
> ome-users mailing list
> ome-users at lists.openmicroscopy.org.uk
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>
> William Moore
> Division of Gene Regulation and Expression
> College of Life Sciences
> University of Dundee
> Scotland
> DD1 5PH
>
> Tel 01382 386364
>

William Moore
Division of Gene Regulation and Expression
College of Life Sciences
University of Dundee
Scotland
DD1 5PH

Tel 01382 386364

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