[ome-users] Micro-manager import

[Scott Grieshaber]

Hi

We are running OMERO 4.0.3 on OSX and are not able to import our  
micromanager data sets.  If i generate a test data set using the demo  
camera the importer works just fine.  However, when we take images  
using our camera (Cascade II EMCCD) import fails with the following  
exception.  I am guessing this is a metadata issue differing between  
the different cameras?


java.lang.NullPointerException
	at ome.util.LSID.<init>(LSID.java:62)
	at  
ome 
.formats 
.OMEROMetadataStoreClient 
.setDetectorSettingsDetector(OMEROMetadataStoreClient.java:992)
	at  
loci 
.formats 
.meta.FilterMetadata.setDetectorSettingsDetector(FilterMetadata.java: 
264)
	at  
loci.formats.in.MicromanagerReader.initFile(MicromanagerReader.java:439)
	at loci.formats.FormatReader.setId(FormatReader.java:327)
	at loci.formats.ImageReader.setId(ImageReader.java:581)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:76)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:187)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:76)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:83)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:76)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:189)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java: 
313)
	at ome.formats.importer.ImportHandler.importImages(ImportHandler.java: 
192)
	at ome.formats.importer.ImportHandler.access$0(ImportHandler.java:110)
	at ome.formats.importer.ImportHandler$1.run(ImportHandler.java:91)

If you need a test data set let me know.

All the Best

Scott


Scott Grieshaber Ph.D.
Assistant Professor
University of Florida
Department of Oral Biology
School of Dentistry
PO BOX 100424 Room D5-33D
1600 SW Archer Road
Gainesville FL 32610
(352) 273-8856
sgriesha at ufl.edu

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