[ome-users] Omero Blitz error

[josh.moore at gmx.de]

Paulo Almeida writes:
 > Hi Josh,

Paulo,

that was helpful, thanks. The error you are getting with hudson.sh is
a different one:

    public static IceInternal.DispatchStatus
                             ^
/home/cgl/OMERO_test/OMERO/components/blitz/generated/omero/model/Job.java:559: cannot find symbol
symbol  : class DispatchStatus
location: package IceInternal
    public static IceInternal.DispatchStatus
                             ^

This points to mismatched Ice versions. Can you verify:

$ slice2java --version
3.3.0

I added a ticket:

  https://trac.openmicroscopy.org.uk/omero/ticket/1185

for adding a check to the build. Thanks again.

Best wishes,
~Josh.

 > I'm sending the output of hudson.sh. I just replaced the BUILD_NUMBER
 > variable with '1' and ran the script. It suggested using -Xlint:unchecked
 > for details; should I do that, or is this output enough?
 > 
 > Also, I ran:
 > 
 > sh hudson.sh 2>&1 > hudson.txt
 > 
 > hudson.txt is the result of that and console.txt is what was written to
 > the console as the script ran.
 > 
 > I'm sending this offlist as you suggested, but feel free to reply on the
 > list if it may help others.
 > 
 > Thanks,
 > Paulo
 > 
 > > Paulo Almeida writes:
 > >  > Hi Josh,
 > >
 > > Hi Paulo,
 > >
 > >  > I tried that export in hudson.sh and it still fails with the same
 > > error. I
 > >  > also tried to run hudson.sh itself, just to see what happened and it
 > > also
 > >  > failed (although from what I read of the script I don't know if I was
 > >  > supposed to run it).
 > >  >
 > >  > We are building on 64-bit Linux (kernel is 2.6.26 amd64), with java
 > >  > version giving me this:
 > >  >
 > >  > java version "1.6.0_12"
 > >  > Java(TM) SE Runtime Environment (build 1.6.0_12-b04)
 > >  > Java HotSpot(TM) 64-Bit Server VM (build 11.2-b01, mixed mode)
 > >
 > > Thanks for the info. Could you possibly run hudson.sh and send me the
 > > output, offlist if you'd prefer?
 > >
 > >  > Thank you,
 > >  > Paulo
 > >
 > > Cheers,
 > > ~j.
 > >
 > >  > > Paulo Almeida writes:
 > >  > >  > Hi,
 > >  > >
 > >  > > Hi Paulo,
 > >  > >
 > >  > >  > We are trying to install Omero/Omero Blitz and we get a java error
 > > when
 > >  > >  > running:
 > >  > >  >
 > >  > >  > java -Xms512m -Xmx1512m -XX:+UseConcMarkSweepGC
 > > -XX:+CMSIncrementalMode
 > >  > >  > -XX:+PrintGCDetails -XX:+PrintGCTimeStamps omero
 > >  > >  >
 > >  > >  > We tried just "java omero" first, the switches were for debugging.
 > > We
 > >  > > also
 > >  > >  > used -XX:-UseGCOverheadLimit , but it gave the same error. The
 > > computer
 > >  > >  > still had a lot of memory available.
 > >  > >
 > >  > > This is a problem we've also run into on certain platforms. What are
 > >  > > you building on? To workaround, take a look at OMERO_HOME/hudson.sh
 > >  > > which performs the continuous builds. Specifically:
 > >  > >
 > >  > > export JAVA_OPTS=${JAVA_OPTS:-"-Xmx600M -Djavac.maxmem=600M
 > >  > > -Djavadoc.maxmem=600M -XX:MaxPermSize=256m"}
 > >  > >
 > >  > > are the settings we use.
 > >  > >
 > >  > > Best wishes,
 > >  > > ~Josh.
 > >  > >
 > >  > >  > The stack trace follows:
 > >  > >  >
 > >  > >  > -----------
 > >  > >  > The system is out of resources.
 > >  > >  > Consult the following stack trace for details.
 > >  > >  > java.lang.OutOfMemoryError: GC overhead limit exceeded
 > >  > >  >         at
 > >  > >  > com.sun.tools.javac.code.Scope$ImportScope.makeEntry(Scope.java:385)
 > >  > >  >         at com.sun.tools.javac.code.Scope.enter(Scope.java:196)
 > >  > >  >         at
 > >  > >  > com.sun.tools.javac.comp.MemberEnter$2.importFrom(MemberEnter.java:198)
 > >  > >  >         at
 > >  > >  > com.sun.tools.javac.comp.MemberEnter$2.enterAnnotation(MemberEnter.java:203)
 > >  > >  >         at
 > > com.sun.tools.javac.comp.Annotate.flush(Annotate.java:95)
 > >  > >  >         at
 > >  > > com.sun.tools.javac.comp.Annotate.enterDone(Annotate.java:87)
 > >  > >  >         at com.sun.tools.javac.comp.Enter.complete(Enter.java:472)
 > >  > >  >         at com.sun.tools.javac.comp.Enter.main(Enter.java:429)
 > >  > >  >         at
 > >  > >  > com.sun.tools.javac.main.JavaCompiler.enterTrees(JavaCompiler.java:819)
 > >  > >  >         at
 > >  > >  > com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:727)
 > >  > >  >         at com.sun.tools.javac.main.Main.compile(Main.java:353)
 > >  > >  >         at com.sun.tools.javac.main.Main.compile(Main.java:279)
 > >  > >  >         at com.sun.tools.javac.main.Main.compile(Main.java:270)
 > >  > >  >         at com.sun.tools.javac.Main.compile(Main.java:69)
 > >  > >  >         at com.sun.tools.javac.Main.main(Main.java:54)
 > >  > >  >
 > >  > >  > BUILD FAILED
 > >  > >  > /home/cgl/OMERO_test/OMERO_blitz/build.xml:108: The following
 > > error
 > >  > >  > occurred while executing this line:
 > >  > >  > /home/cgl/OMERO_test/OMERO_blitz/components/antlib/resources/global.xml:74:
 > >  > >  > The following error occurred while executing this line:
 > >  > >  > /home/cgl/OMERO_test/OMERO_blitz/components/blitz/build.xml:25:
 > > The
 > >  > >  > following error occurred while executing this line:
 > >  > >  > /home/cgl/OMERO_test/OMERO_blitz/components/antlib/resources/lifecycle.xml:122:
 > >  > >  > Compile failed; see the compiler error output for details.
 > >  > >  >
 > >  > >  > Total time: 2 minutes 48 seconds
 > >  > >  > Heap
 > >  > >  >  par new generation   total 38336K, used 13664K
 > > [0x00007f5c5b4f0000,
 > >  > >  > 0x00007f5c5de80000, 0x00007f5c5de80000)
 > >  > >  >   eden space 34112K,  34% used [0x00007f5c5b4f0000,
 > > 0x00007f5c5c080cc0,
 > >  > >  > 0x00007f5c5d640000)
 > >  > >  >   from space 4224K,  43% used [0x00007f5c5da60000,
 > > 0x00007f5c5dc27638,
 > >  > >  > 0x00007f5c5de80000)
 > >  > >  >   to   space 4224K,   0% used [0x00007f5c5d640000,
 > > 0x00007f5c5d640000,
 > >  > >  > 0x00007f5c5da60000)
 > >  > >  >  concurrent mark-sweep generation total 481728K, used 12149K
 > >  > >  > [0x00007f5c5de80000, 0x00007f5c7b4f0000, 0x00007f5cb9cf0000)
 > >  > >  >  concurrent-mark-sweep perm gen total 63544K, used 38348K
 > >  > >  > [0x00007f5cb9cf0000, 0x00007f5cbdafe000, 0x00007f5cbf0f0000)
 > >  > >  >
 > >  > >  > Thanks,
 > >  > >  > Paulo
 > >  > >
 > >  >
 > >