[ome-users] Omero Blitz error

josh.moore at gmx.de josh.moore at gmx.de
Tue Feb 17 12:03:30 GMT 2009


Paulo Almeida writes:
 > Hi,

Hi Paulo,

 > We are trying to install Omero/Omero Blitz and we get a java error when
 > running:
 > 
 > java -Xms512m -Xmx1512m -XX:+UseConcMarkSweepGC -XX:+CMSIncrementalMode
 > -XX:+PrintGCDetails -XX:+PrintGCTimeStamps omero
 > 
 > We tried just "java omero" first, the switches were for debugging. We also
 > used -XX:-UseGCOverheadLimit , but it gave the same error. The computer
 > still had a lot of memory available.

This is a problem we've also run into on certain platforms. What are
you building on? To workaround, take a look at OMERO_HOME/hudson.sh
which performs the continuous builds. Specifically:

export JAVA_OPTS=${JAVA_OPTS:-"-Xmx600M -Djavac.maxmem=600M
-Djavadoc.maxmem=600M -XX:MaxPermSize=256m"}

are the settings we use.

Best wishes,
~Josh.

 > The stack trace follows:
 > 
 > -----------
 > The system is out of resources.
 > Consult the following stack trace for details.
 > java.lang.OutOfMemoryError: GC overhead limit exceeded
 >         at
 > com.sun.tools.javac.code.Scope$ImportScope.makeEntry(Scope.java:385)
 >         at com.sun.tools.javac.code.Scope.enter(Scope.java:196)
 >         at
 > com.sun.tools.javac.comp.MemberEnter$2.importFrom(MemberEnter.java:198)
 >         at
 > com.sun.tools.javac.comp.MemberEnter$2.enterAnnotation(MemberEnter.java:203)
 >         at com.sun.tools.javac.comp.Annotate.flush(Annotate.java:95)
 >         at com.sun.tools.javac.comp.Annotate.enterDone(Annotate.java:87)
 >         at com.sun.tools.javac.comp.Enter.complete(Enter.java:472)
 >         at com.sun.tools.javac.comp.Enter.main(Enter.java:429)
 >         at
 > com.sun.tools.javac.main.JavaCompiler.enterTrees(JavaCompiler.java:819)
 >         at
 > com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:727)
 >         at com.sun.tools.javac.main.Main.compile(Main.java:353)
 >         at com.sun.tools.javac.main.Main.compile(Main.java:279)
 >         at com.sun.tools.javac.main.Main.compile(Main.java:270)
 >         at com.sun.tools.javac.Main.compile(Main.java:69)
 >         at com.sun.tools.javac.Main.main(Main.java:54)
 > 
 > BUILD FAILED
 > /home/cgl/OMERO_test/OMERO_blitz/build.xml:108: The following error
 > occurred while executing this line:
 > /home/cgl/OMERO_test/OMERO_blitz/components/antlib/resources/global.xml:74:
 > The following error occurred while executing this line:
 > /home/cgl/OMERO_test/OMERO_blitz/components/blitz/build.xml:25: The
 > following error occurred while executing this line:
 > /home/cgl/OMERO_test/OMERO_blitz/components/antlib/resources/lifecycle.xml:122:
 > Compile failed; see the compiler error output for details.
 > 
 > Total time: 2 minutes 48 seconds
 > Heap
 >  par new generation   total 38336K, used 13664K [0x00007f5c5b4f0000,
 > 0x00007f5c5de80000, 0x00007f5c5de80000)
 >   eden space 34112K,  34% used [0x00007f5c5b4f0000, 0x00007f5c5c080cc0,
 > 0x00007f5c5d640000)
 >   from space 4224K,  43% used [0x00007f5c5da60000, 0x00007f5c5dc27638,
 > 0x00007f5c5de80000)
 >   to   space 4224K,   0% used [0x00007f5c5d640000, 0x00007f5c5d640000,
 > 0x00007f5c5da60000)
 >  concurrent mark-sweep generation total 481728K, used 12149K
 > [0x00007f5c5de80000, 0x00007f5c7b4f0000, 0x00007f5cb9cf0000)
 >  concurrent-mark-sweep perm gen total 63544K, used 38348K
 > [0x00007f5cb9cf0000, 0x00007f5cbdafe000, 0x00007f5cbf0f0000)
 > 
 > Thanks,
 > Paulo



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