[ome-users] PYTHONPATH

[Gordon W. Laurie]

We are having an apparent PYTHONPATH issue (see thread below) and have the 
suggestion from Ruben to edit our /home/@user/.bashrc file then add an 
export PYTHONPATH line.

Two questions:
1. Having a limited working knowledge of Unix, how do we edit this file?
2. Since we are running OMERO 4.0.3 and Python 2.5.1, should be first do 
upgrades on both, then work out problems later.  Can we upgrade directly 
from OMERO 4.0.3 to 4.1.1?

Gordon.



Begin forwarded message:

From: Ruben Bernardo Alves <rubenalves at fm.ul.pt>
Date: December 11, 2009 8:36:05 PM EST
To: "Gordon W. Laurie" <glaurie at virginia.edu>
Subject: Re: [ome-users] ImportError: No module name Ice2

I don't know, try to post this question on the OMERO forum.

Cheers

-----"Gordon W. Laurie" <glaurie at virginia.edu> wrote: -----

To: » Ruben Alves <rubenalves at fm.ul.pt>
From: "Gordon W. Laurie" <glaurie at virginia.edu>
Date: 12/11/2009 08:05PM
Subject: Re: [ome-users] ImportError: No module name Ice2

Dear Ruben:

I note that you are using Python2.6.  Would it make sense to upgrade now to
the latest Python (Python 2.6.4), and to Omero 4.1.1?  Then work out any
problems later.  Can I go upgrade to the latter directly from 4.0.3?

Gordon.



On Fri, 11 Dec 2009 10:20:17 +0000
  » Ruben Alves <rubenalves at fm.ul.pt> wrote:
> OK, try to edit your /home/@user/.bashrc, and at the end add the following 
>line:
> export 
>PYTHONPATH=/usr/lib/pymodules/python2.6/:/opt/Ice-3.3/python/:/@your_OMERO_path/lib/python/:/usr/local/lib/python2.6/:/usr/lib/python2.6/
> 
> There are severals path for python lib, I was able to run "something" only 
>with long path.
> 
> note: I'm running Omero 4.1.1
> 
> Cheers
> 
> 
> 
> 
> Gordon W. Laurie wrote:
>> Thanks, I ran echo $PYTHONPATH and got '/opt/Ice-3.3/python:'.  I assume 
>>this indicates an okay path. Below is the Python info.
>>
>> Gordon.
>>
>> Python 2.5.1 (r251:54863, Feb  6 2009, 19:02:12)
>> [GCC 4.0.1 (Apple Inc. build 5465)] on darwin
>>
>>
>>
>>
>> On Thu, 10 Dec 2009 19:21:11 +0000
>>  Ruben Bernardo Alves <rubenalves at fm.ul.pt> wrote:
>>> Hi Gordon,
>>> Did you check your $PYTHONPATH ?
>>> ex: echo $PYTHONPATH
>>>
>>> note: maybe a python update could break the links or the path.
>>>
>>> Cheers
>>>
>>>
>>> -----ome-users-bounces at lists.openmicroscopy.org.uk wrote: -----
>>>
>>> To: ome-users at lists.openmicroscopy.org.uk
>>> From: "Gordon W. Laurie" <glaurie at virginia.edu>
>>> Sent by: ome-users-bounces at lists.openmicroscopy.org.uk
>>> Date: 12/10/2009 07:15PM
>>> Subject: [ome-users] ImportError: No module name Ice
>>>
>>>  Upon restarting OMERO, I am encountering 'ImportError: No module named 
>>>Ice'.  Have OMERO 4.0.3 running and Ice 3.3.1.
>>>
>>> Any suggestions?
>>>
>>> Gordon.
>>>
>>>
>>>
>>> Gordon W. Laurie, PhD
>>> Associate Professor
>>> Department of Cell Biology
>>> Director, Biotechnology Training Program
>>> University of Virginia
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>>> ome-users at lists.openmicroscopy.org.uk
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>>
>>
>> Gordon W. Laurie, PhD
>> Associate Professor
>> Department of Cell Biology
>> Director, Biotechnology Training Program
>> University of Virginia
>>
> 
> 
> -- 
> Ruben Alves 
> System Analyst USI @ Instituto de Medicina Molecular
> Edifício Egas Moniz Av. Prof. Egas Moniz 1649-028 Lisboa Portugal tel: 
>217999411 ext 47026
> rubenalves at fm.ul.pt
> 
> 




Gordon W. Laurie, PhD
Associate Professor
Department of Cell Biology
Director, Biotechnology Training Program
University of Virginia