[ome-users] Big problems with OMERO.importer on Mac OSx

[» Ruben Alves]

Hi everyone,
I'm a fresh new user of OMERO (maybe one month), and i've build a fresh 
new Linux Server with OMERO here at IMM.
Everything is working fine in every aspect. But, recently one of the 
project manager whanted to try it, but he just can't connect to OMERO on 
is MacOSx. But he only can't connect on the OMERO.importer, because the 
OMERO.insight is currently working perfectly in Windows , Linux and of 
course Mac.
I've exported the error log. It's important to know, at the connection 
time, my firewall was off (iptables -F | iptables -X). And at the same 
time (with 1 or 2 minutes difference), another connection was 
established with a Windows client AND a Linux (ubuntu) client. The 
windows client was on the network, and the ubuntu client was on a 
Virtual Machine.

I Really hope someone had this kind of bad experience. I've spent so 
many hours on that, and now i can't get a neutral view of the problematic.

Best regards,

// Ruben
ps: actually, on the log "ruben" is the login and "10.20.20.52" is the 
server ip address.

0          [  Thread-5] DEBUG            ome.formats.OMEROMetadataStore  
- Initializing store: ruben/<3chars> 10.20.20.52:1099
1013       [  Thread-5] INFO          ome.formats.importer.LoginHandler  
- java.lang.Exception: 
org.springframework.jndi.JndiLookupFailureException: 
JndiObjectTargetSource failed to obtain new target object; nested 
exception is javax.naming.CommunicationException [Root exception is 
java.rmi.ConnectException: Connection refused to host: ubuntu.fm.ul.pt; 
nested exception is:
   java.net.ConnectException: Connection refused]
   at ome.formats.OMEROMetadataStore.<init>(OMEROMetadataStore.java:152)
   at ome.formats.importer.LoginHandler.isValidLogin(LoginHandler.java:227)
   at ome.formats.importer.LoginHandler.access$10(LoginHandler.java:223)
   at ome.formats.importer.LoginHandler$1.run(LoginHandler.java:137)
Caused by: org.springframework.jndi.JndiLookupFailureException: 
JndiObjectTargetSource failed to obtain new target object; nested 
exception is javax.naming.CommunicationException [Root exception is 
java.rmi.ConnectException: Connection refused to host: ubuntu.fm.ul.pt; 
nested exception is:
   java.net.ConnectException: Connection refused]
   at 
org.springframework.jndi.JndiObjectTargetSource.getTarget(JndiObjectTargetSource.java:138) 

   at ome.client.JBossTargetSource.getTarget(JBossTargetSource.java:73)
   at 
org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:184) 

   at $Proxy6.findByString(Unknown Source)
   at ome.formats.OMEROMetadataStore.<init>(OMEROMetadataStore.java:149)
   ... 3 more
Caused by: javax.naming.CommunicationException [Root exception is 
java.rmi.ConnectException: Connection refused to host: ubuntu.fm.ul.pt; 
nested exception is:
   java.net.ConnectException: Connection refused]
   at org.jnp.interfaces.NamingContext.lookup(NamingContext.java:724)
   at org.jnp.interfaces.NamingContext.lookup(NamingContext.java:589)
   at javax.naming.InitialContext.lookup(InitialContext.java:351)
   at 
org.springframework.jndi.JndiTemplate$1.doInContext(JndiTemplate.java:123)
   at org.springframework.jndi.JndiTemplate.execute(JndiTemplate.java:85)
   at org.springframework.jndi.JndiTemplate.lookup(JndiTemplate.java:121)
   at org.springframework.jndi.JndiTemplate.lookup(JndiTemplate.java:146)
   at 
org.springframework.jndi.JndiLocatorSupport.lookup(JndiLocatorSupport.java:93) 

   at 
org.springframework.jndi.JndiObjectLocator.lookup(JndiObjectLocator.java:105) 

   at 
org.springframework.jndi.JndiObjectTargetSource.getTarget(JndiObjectTargetSource.java:131) 

   ... 7 more
Caused by: java.rmi.ConnectException: Connection refused to host: 
ubuntu.fm.ul.pt; nested exception is:
   java.net.ConnectException: Connection refused
   at sun.rmi.transport.tcp.TCPEndpoint.newSocket(TCPEndpoint.java:574)
   at 
sun.rmi.transport.tcp.TCPChannel.createConnection(TCPChannel.java:185)
   at sun.rmi.transport.tcp.TCPChannel.newConnection(TCPChannel.java:171)
   at sun.rmi.server.UnicastRef.invoke(UnicastRef.java:94)
   at org.jnp.server.NamingServer_Stub.lookup(Unknown Source)
   at org.jnp.interfaces.NamingContext.lookup(NamingContext.java:627)
   ... 16 more
Caused by: java.net.ConnectException: Connection refused
   at java.net.PlainSocketImpl.socketConnect(Native Method)
   at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
   at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
   at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
   at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:430)
   at java.net.Socket.connect(Socket.java:520)
   at java.net.Socket.connect(Socket.java:470)
   at java.net.Socket.<init>(Socket.java:367)
   at java.net.Socket.<init>(Socket.java:180)
   at 
sun.rmi.transport.proxy.RMIDirectSocketFactory.createSocket(RMIDirectSocketFactory.java:22) 

   at 
sun.rmi.transport.proxy.RMIMasterSocketFactory.createSocket(RMIMasterSocketFactory.java:128) 

   at sun.rmi.transport.tcp.TCPEndpoint.newSocket(TCPEndpoint.java:569)
   ... 21 more


-- 
Ruben Alves
USI @ Instituto de Medicina Molecular
Edifício Egas Moniz 
Av. Prof. Egas Moniz 1649-028 Lisboa Portugal 
tel: 217999400 ext 47026