[ome-users] Mac OS X OMERO.server installation
wormbuff
wormbuff at gmail.com
Thu May 31 21:57:34 BST 2007
Apologies for some details that I omitted:
-> I have installed the OMERO.server Beta 1 (Jan 07) .dmg package
-> I have installed the OMERO.insight Beta 1.1 (Mar 07) .dmg package
-> I have installed the OMERO.admin Beta 1.2 (Apr 07) .dmg package
I think that postgres is correctly installed and configured (though
as I mentioned, I had to set a password for postgres to be able to
"su -l postgres")
-> installation resides in /Library/PostgreSQL8 and is owned by
postgres/postgres
-> when I try to Login with .admin or .insight, there is no
indication in PostgreSQL8.log that an invalid login has occurred
(though occasionally it is logging
LOG: could not receive data from client: Connection reset by peer
LOG: incomplete startup packet
Is this a problem with my OMERO.server installation or JBoss? As I
asked earlier, should I have a jboss-4.0.4.GA directory somewhere in
my system? Or does the fact that OMERO.admin/OMERO.insight loads up
to the splash/login screen indicate that all the Java components are
properly installed and activated?
Thanks again.
On May 31, 2007, at 12:41 PM, wormbuff wrote:
> I have encountered some difficulties while installing
> OMERO.server. I am attempting to install OMERO.server Beta 1 on
> Mac OS v10.4.8. When I try to login using either .admin
> or .insight, I have no luck. I have been trying to track down
> where the problem is, but to no avail.
>
> I downloaded the Mac OS X package installation and it installed
> successfully (at least it did not report an error). However, upon
> trying to login with .admin (using localhost with l/p: root/omero),
> the login attempt fails.
>
> I tried working through the OmeroInstall trac pages and this is
> what I have been able to verify.
>
> -> Port 1099 and 5432 are open
> -> javac v1.5.0_07
> -> postgres v8.1.5 is installed in /Library/PostgreSQL8/bin
> -> in postgres, omero3 database exists and omero user exists
> NOTE: to "su postgres" I had to assign a password to the postgres
> account
>
> -> I would try to initialize the OMERO database by running
> "$JBOSS_HOME/bin/run.sh", however, I do not seem to have
> "jboss-4.0.4.GA" in my OMERO directory. The closest thing I see is
> OMERO/server/client/jbosssx-4.0.4.GA.jar
>
> -> Upon trying to in initialize the OMERO database with "sudo java
> omero update setup-db deploy" (sudo as /Applications/OMERO is owned
> by root) I get the following message:
>
> /Applications/OMERO/server $ sudo java omero update setup-db deploy
> Password:
> Buildfile: build.xml
>
> update:
> Created dir: /Applications/OMERO/server/omero756254785
> Copying 1 file to /Applications/OMERO/server/omero756254785
> Updating jar: /Applications/OMERO/server/omero.ear
> Deleting directory /Applications/OMERO/server/omero756254785
>
> reload-db:
> statements executed successfully
> Executing file: /Applications/OMERO/server/target/ddl.sql
> Failed to execute: create table aberrationcorrection ( id int8
> not null, owner_id int8 not null, group_id int8 not null,
> creation_id int8 not null, permissions int8 not null, external_id
> int8 unique, value varchar(255) not null unique, primary key (id) )
>
> BUILD FAILED
> /Applications/OMERO/server/build.xml:71: The following error
> occurred while executing this line:
> /Applications/OMERO/server/components/server/build.xml:17: The
> following error occurred while executing this line:
> /Applications/OMERO/server/components/antlib/resources/macros.xml:
> 94: org.postgresql.util.PSQLException: ERROR: relation
> "aberrationcorrection" already exists
>
> Total time: 11 seconds
>
> Any help/insight would be greatly appreciated. Thanks!
>
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