[ome-users] Mac OS X OMERO.server installation

wormbuff wormbuff at gmail.com
Thu May 31 21:57:34 BST 2007


Apologies for some details that I omitted:

-> I have installed the OMERO.server Beta 1 (Jan 07) .dmg package
-> I have installed the OMERO.insight Beta 1.1 (Mar 07) .dmg package
-> I have installed the OMERO.admin Beta 1.2 (Apr 07) .dmg package

I think that postgres is correctly installed and configured (though  
as I mentioned, I had to set a password for postgres to be able to  
"su -l postgres")
-> installation resides in /Library/PostgreSQL8 and is owned by  
postgres/postgres
-> when I try to Login with .admin or .insight, there is no  
indication in PostgreSQL8.log that an invalid login has occurred  
(though occasionally it is logging

LOG:  could not receive data from client: Connection reset by peer
LOG:  incomplete startup packet

Is this a problem with my OMERO.server installation or JBoss?  As I  
asked earlier, should I have a jboss-4.0.4.GA directory somewhere in  
my system?  Or does the fact that OMERO.admin/OMERO.insight loads up  
to the splash/login screen indicate that all the Java components are  
properly installed and activated?

Thanks again.

On May 31, 2007, at 12:41 PM, wormbuff wrote:

> I have encountered some difficulties while installing  
> OMERO.server.  I am attempting to install OMERO.server Beta 1 on  
> Mac OS v10.4.8.  When I try to login using either .admin  
> or .insight, I have no luck.  I have been trying to track down  
> where the problem is, but to no avail.
>
> I downloaded the Mac OS X package installation and it installed  
> successfully (at least it did not report an error).  However, upon  
> trying to login with .admin (using localhost with l/p: root/omero),  
> the login attempt fails.
>
> I tried working through the OmeroInstall trac pages and this is  
> what I have been able to verify.
>
> -> Port 1099 and 5432 are open
> -> javac v1.5.0_07
> -> postgres v8.1.5 is installed in /Library/PostgreSQL8/bin
> -> in postgres, omero3 database exists and omero user exists
> NOTE: to "su postgres" I had to assign a password to the postgres  
> account
>
> -> I would try to initialize the OMERO database by running  
> "$JBOSS_HOME/bin/run.sh", however, I do not seem to have  
> "jboss-4.0.4.GA" in my OMERO directory.  The closest thing I see is  
> OMERO/server/client/jbosssx-4.0.4.GA.jar
>
> -> Upon trying to in initialize the OMERO database with "sudo java  
> omero update setup-db deploy" (sudo as /Applications/OMERO is owned  
> by root) I get the following message:
>
> /Applications/OMERO/server $ sudo java omero update setup-db deploy
> Password:
> Buildfile: build.xml
>
> update:
> Created dir: /Applications/OMERO/server/omero756254785
> Copying 1 file to /Applications/OMERO/server/omero756254785
> Updating jar: /Applications/OMERO/server/omero.ear
> Deleting directory /Applications/OMERO/server/omero756254785
>
> reload-db:
> statements executed successfully
> Executing file: /Applications/OMERO/server/target/ddl.sql
> Failed to execute:   create table aberrationcorrection ( id int8  
> not null, owner_id int8 not null, group_id int8 not null,  
> creation_id int8 not null, permissions int8 not null, external_id  
> int8 unique, value varchar(255) not null unique, primary key (id) )
>
> BUILD FAILED
> /Applications/OMERO/server/build.xml:71: The following error  
> occurred while executing this line:
> /Applications/OMERO/server/components/server/build.xml:17: The  
> following error occurred while executing this line:
> /Applications/OMERO/server/components/antlib/resources/macros.xml: 
> 94: org.postgresql.util.PSQLException: ERROR: relation  
> "aberrationcorrection" already exists
>
> Total time: 11 seconds
>
> Any help/insight would be greatly appreciated.  Thanks!
>




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