[ome-users] Matlab installation

Bernd Jagla baj2107 at columbia.edu
Sun Nov 26 19:22:17 GMT 2006


Hi,

I am having trouble again installing the Matlab support on FC4. I am
using Matlab 7.2.0.294 (R2006a). See attached Matlab log file for more
information. 

I don't know if libustdio.so has anything to do with it. It is not
installed on my computer (I couldn't find it). 

Installation without Matlab support is no problem (at the moment).

Matlab is running on single user license (under my name).

Please let me know if you need anything else.

I would appreciate any help.

I tried the current CVS and the 2.6.0 branch.

Thanks a lot

Bernd


PS.:
here is the tail from the log file:

matlab lib src is /usr/local/matlab72/bin/glnx86
USING PERL CONFIGURE SCRIPT -- 'perl Makefile.PL
-include="-I/usr/local/matlab72/extern/include"
-lib="-L/usr/local/matlab72/bin/glnx86 -lmx -leng -lut -lmat -licudata
-licui18n -licuuc -lustdio -lz"'
SUCCESS -- OUTPUT: "Checking if your kit is complete...
 Looks good
 Note (probably harmless): No library found for -lustdio
 Modifying LD_RUN_PATH...
 Modifying LD_LIBRARY_PATH...
 Writing Makefile for OME::Matlab
"

COMPILING MODULE -- 'make'
FAILURE -- OUTPUT: "cp Matlab.pm blib/lib/OME/Matlab.pm
 cp Compiled.pm blib/lib/OME/Compiled.pm
 cp compileDynamicLibraries.pl blib/lib/OME/compileDynamicLibraries.pl
 cp writeLibraryPackage.pl blib/lib/OME/writeLibraryPackage.pl
 /usr/bin/perl /usr/lib/perl5/5.8.6/ExtUtils/xsubpp
-typemap /usr/lib/perl5/5.8.6/ExtUtils/typemap -typemap typemap
Matlab.xs > Matlab.xsc && mv Matlab.xsc Matlab.c
 Please specify prototyping behavior for Matlab.xs (see perlxs manual)
 gcc -c  -I/usr/local/matlab72/extern/include -D_REENTRANT -D_GNU_SOURCE
-DDEBUGGING -fno-strict-aliasing -pipe -I/usr/local/include
-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -O2 -g
-pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m32 -march=i386
-mtune=pentium4 -fasynchronous-unwind-tables   -DVERSION=\"2.006\"
-DXS_VERSION=\"2.006\" -fPIC
"-I/usr/lib/perl5/5.8.6/i386-linux-thread-multi/CORE"   Matlab.c
 In file included from /usr/local/matlab72/extern/include/matrix.h:155,
                  from Matlab.xs:41:
 /usr/local/matlab72/extern/include/tmwtypes.h:682: error: two or more
data types in declaration specifiers
 /usr/local/matlab72/extern/include/tmwtypes.h:682: warning: useless
type name in empty declaration
 make: *** [Matlab.o] Error 1
"

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