[ome-users] MATLAB install errors
McCaughey, Michael J
michael.j.mccaughey at Vanderbilt.Edu
Tue Jan 31 22:33:07 GMT 2006
I'm doing a clean install of OME (latest cvs checkout) on a dual Opteron box running CentOS 4.2. I'm trying to add MATLAB support, but I'm running into the following problem (from PerlModuleTask.log):
USING PERL CONFIGURE SCRIPT -- 'perl Makefile.PL mrmike /usr/matlab'
SUCCESS -- OUTPUT: "WARNING Matlab Version 7.1.0.183 not supported.
Matlab Vers: 7.1.0.183
Matlab Arch: glnxa64
Matlab Home: /usr/matlab
Include:
Lib:
Checking if your kit is complete...
Looks good
Modifying LD_LIBRARY_PATH...
Adding LD_LIBRARY_PATH to Make Test ...
Writing Makefile for OME::Matlab
"
COMPILING MODULE -- 'make'
FAILURE -- OUTPUT: "cp Matlab.pm blib/lib/OME/Matlab.pm
/usr/bin/perl /usr/lib/perl5/5.8.5/ExtUtils/xsubpp -typemap /usr/lib/perl5/5.8
.5/ExtUtils/typemap -typemap typemap Matlab.xs > Matlab.xsc && mv Matlab.xsc Ma
tlab.c
Please specify prototyping behavior for Matlab.xs (see perlxs manual)
gcc -c -I -D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I
/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdb
m -O2 -g -pipe -m64 -DVERSION=\"2.004\" -DXS_VERSION=\"2.004\" -fPIC "-I/usr/l
ib64/perl5/5.8.5/x86_64-linux-thread-multi/CORE" Matlab.c
Matlab.xs:41:20: matrix.h: No such file or directory
Matlab.xs:42:20: engine.h: No such file or directory
Matlab.xs:43: error: syntax error before '*' token
Matlab.xs:43: warning: data definition has no type or storage class
Matlab.xs:44: error: syntax error before '*' token
Matlab.xs:44: warning: data definition has no type or storage class
Matlab.c: In function `XS_OME__Matlab___mxREAL':
Matlab.c:63: error: `mxComplexity' undeclared (first use in this function)
...etc.
I've installed Matlab support on this box before without error, is there something new broken? Is this version of Matlab really not supported? Or have I just done somethng dumb?
Any tips welcome!
Mike
Michael J. MCaughey, PhD
Molecular Physiology and Biophysics
U9203 MRBIII
6-6175
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