[ome-users] MATLAB install errors

[McCaughey, Michael J]

I sure thought it was. To be sure, I trashed the entire installation and checked out again. It worked (at least for MATLAB), I still have some odd db issues.

Thanks for the help.
Mike

Michael J. MCaughey, PhD
Molecular Physiology and Biophysics
U9203 MRBIII
6-6175



-----Original Message-----
From: Macura, Tomasz (NIH/NIA/IRP) [F] [mailto:macurato at grc.nia.nih.gov]
Sent: Wed 2/1/2006 8:49 AM
To: McCaughey, Michael J; ome-users at lists.openmicroscopy.org.uk
Subject: RE: [ome-users] MATLAB install errors
 
Hi Mike,

Are you absolutely confident that you are trying to install the latest OME checkout? Could you please double check? Based on the output, you are actually trying to install OME 2.4.0.

Let me know how it goes,

Tom Macura

-----Original Message-----
From: McCaughey, Michael J [mailto:michael.j.mccaughey at Vanderbilt.Edu]
Sent: Tue 31/01/2006 17:33
To: ome-users at lists.openmicroscopy.org.uk
Subject: [ome-users] MATLAB install errors
 
I'm doing a clean install of OME (latest cvs checkout) on a dual Opteron box running CentOS 4.2. I'm trying to add MATLAB support, but I'm running into the following problem (from PerlModuleTask.log):
USING PERL CONFIGURE SCRIPT -- 'perl Makefile.PL mrmike /usr/matlab'
SUCCESS -- OUTPUT: "WARNING Matlab Version 7.1.0.183 not supported.
   Matlab Vers: 7.1.0.183
   Matlab Arch: glnxa64
   Matlab Home: /usr/matlab

   Include:
   Lib:

 Checking if your kit is complete...
 Looks good
 Modifying LD_LIBRARY_PATH...
 Adding LD_LIBRARY_PATH to Make Test ...
 Writing Makefile for OME::Matlab
"

COMPILING MODULE -- 'make'
FAILURE -- OUTPUT: "cp Matlab.pm blib/lib/OME/Matlab.pm
 /usr/bin/perl /usr/lib/perl5/5.8.5/ExtUtils/xsubpp  -typemap /usr/lib/perl5/5.8
.5/ExtUtils/typemap -typemap typemap  Matlab.xs > Matlab.xsc && mv Matlab.xsc Ma
tlab.c
 Please specify prototyping behavior for Matlab.xs (see perlxs manual)
 gcc -c  -I -D_REENTRANT -D_GNU_SOURCE -DDEBUGGING -fno-strict-aliasing -pipe -I
/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdb
m -O2 -g -pipe -m64   -DVERSION=\"2.004\" -DXS_VERSION=\"2.004\" -fPIC "-I/usr/l
ib64/perl5/5.8.5/x86_64-linux-thread-multi/CORE"   Matlab.c
 Matlab.xs:41:20: matrix.h: No such file or directory
 Matlab.xs:42:20: engine.h: No such file or directory
 Matlab.xs:43: error: syntax error before '*' token
 Matlab.xs:43: warning: data definition has no type or storage class
 Matlab.xs:44: error: syntax error before '*' token
 Matlab.xs:44: warning: data definition has no type or storage class
 Matlab.c: In function `XS_OME__Matlab___mxREAL':
 Matlab.c:63: error: `mxComplexity' undeclared (first use in this function)

...etc.

I've installed Matlab support on this box before without error, is there something new broken? Is this version of Matlab really not supported? Or have I just done somethng dumb?

Any tips welcome!

Mike

Michael J. MCaughey, PhD
Molecular Physiology and Biophysics
U9203 MRBIII
6-6175



-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20060201/58ecdc02/attachment.html>