[ome-users] cvs install
Javier Tibau
jatb86 at gmail.com
Wed Dec 20 14:52:44 GMT 2006
I lost my id_dsa files so now I can't connect to the cvs server. The problem
is I suspect there's something wrong with the anonymous cvs download. When I
downloaded as an authenticated user I could install with no problem. Now
(anoncvs download) I get some problems with automake/autoconf.
automake version: 1.9.6
autoconf version: 2.59
This is my binary builds:
****************************************************************************************************************************************
USING C CONFIGURE SCRIPT -- './configure --prefix=/OME
--with-omeis-root=/OME/OMEIS'
SUCCESS -- OUTPUT: "checking for a BSD-compatible install...
/usr/bin/install -c
checking whether build environment is sane... yes
checking whether make sets $(MAKE)... yes
checking for working aclocal-1.4... missing
checking for working autoconf... found
checking for working automake-1.4... missing
checking for working autoheader... found
checking for working makeinfo... missing
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for a BSD-compatible install... /usr/bin/install -c
checking whether make sets $(MAKE)... (cached) yes
checking for ranlib... ranlib
configure: using OMEIS root... /OME/OMEIS
configure: using OMEIS JPEG quality default... 80
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGE_FILES value needed for large files... no
checking for BZ2_bzDecompress in -lbz2... yes
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking for png_init_io in -lpng... yes
checking png.h usability... yes
checking png.h presence... yes
checking for png.h... yes
checking for jpeg_start_compress in -ljpeg... yes
checking jpeglib.h usability... yes
checking jpeglib.h presence... yes
checking for jpeglib.h... yes
checking for TIFFReadScanline in -ltiff... yes
checking tiffio.h usability... yes
checking tiffio.h presence... yes
checking for tiffio.h... yes
checking if ssl is wanted... yes
OpenSSL found in /usr
checking if zlib is wanted... yes
checking for inflateEnd in -lz... yes
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for inflateEnd in -lz... (cached) yes
checking zlib in /usr... ok
checking for compat version of Berkeley DB... /usr/include/db_185.h
checking for Berkeley DB usability... yes
checking for LZW encoder in -ltiff... yes
checking for ANSI C header files... (cached) yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking for off_t... yes
checking for size_t... yes
checking for void *... yes
checking size of void *... 4
checking for int... yes
checking size of int... 4
checking for long... yes
checking size of long... 4
checking for long long int... yes
checking size of long long int... 8
configure: using off_t format string... "lld"
configure: using OID format string... "llu"
checking for stdlib.h... (cached) yes
checking for unistd.h.. . (cached) yes
checking for getpagesize... yes
checking for working mmap... yes
checking for vprintf... yes
checking for _doprnt... no
checking for mkdir... yes
checking for socket... yes
checking for strdup... yes
checking for strerror... yes
checking for strstr... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating zoom/Makefile
config.status: creating zoom/lib/Makefile
config.status: creating t/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing default-1 commands
"
COMPILING MODULE -- 'make'
FAILURE -- OUTPUT: "make all-recursive
make[1]: Entering directory `/home/jtibau/Projects/OME/src/C/omeis'
Making all in zoom
make[2]: Entering directory `/home/jtibau/Projects/OME/src/C/omeis/zoom'
Making all in lib
make[3]: Entering directory
`/home/jtibau/Projects/OME/src/C/omeis/zoom/lib'
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c window.c
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c pic.c
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c pic_file.c
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c pic_all.c
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c swap.c
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c tiff.c
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c jpeg.c
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c png.c
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c omeis.c
rm -f libpic.a
ar cru libpic.a window.o pic.o pic_file.o pic_all.o swap.o tiff.o jpeg.o
png.o omeis.o
ranlib libpic.a
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c zoom.c
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c scanline.c
scanline.c : In function 'scanline_zero':
scanline.c:98: warning: incompatible implicit declaration of built-in
function 'bzero'
gcc -DHAVE_CONFIG_H -I. -I. -I../.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c filt.c
rm -f libzoom.a
ar cru libzoom.a zoom.o scanline.o filt.o
ranlib libzoom.a
make[3]: Leaving directory `/home/jtibau/Projects/OME/src/C/omeis/zoom/lib'
make[3]: Entering directory `/home/jtibau/Projects/OME/src/C/omeis/zoom'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/home/jtibau/Projects/OME/src/C/omeis/zoom'
make[2]: Leaving directory `/home/jtibau/Projects/OME/src/C/omeis/zoom'
Making all in t
make[2]: Entering directory `/home/jtibau/Projects/OME/src/C/omeis/t'
gcc -DHAVE_CONFIG_H -I. -I. -I.. -DOMEIS_ROOT=\"/OME/OMEIS\"
-I../zoom/include -I/usr/include/libxml2 -I/usr/include -g -O2
-I/usr/include/openssl -DHAVE_SSL -I/usr/include -c test-concurrent-write.c
gcc -g -O2 -I/usr/include/openssl -DHAVE_SSL -I/usr/include -L/usr/lib
-L/usr/lib -ldb -o test-concurrent-write test-concurrent-write.o -L/usr/lib
-lxml2 -lz -lm ../zoom/lib/libzoom.a ../zoom/lib/libpic.a -lz -ltiff -ljpeg
-lpng -lbz2 -lssl -lcrypto
test-concurrent-write.o: In function
`main':/home/jtibau/Projects/OME/src/C/omeis/t/test-concurrent-write.c:82:
undefined reference to `OMEIS_ClearError'
:/home/jtibau/Projects/OME/src/C/omeis/t/test-concurrent-write.c :88:
undefined reference to `NewPixels'
:/home/jtibau/Projects/OME/src/C/omeis/t/test-concurrent-write.c:101:
undefined reference to `DoPixelIO'
:/home/jtibau/Projects/OME/src/C/omeis/t/test-concurrent-write.c :109:
undefined reference to `FinishPixels'
:/home/jtibau/Projects/OME/src/C/omeis/t/test-concurrent-write.c:117:
undefined reference to `freePixelsRep'
:/home/jtibau/Projects/OME/src/C/omeis/t/test-concurrent-write.c :110:
undefined reference to `OMEIS_ReportError'
:/home/jtibau/Projects/OME/src/C/omeis/t/test-concurrent-write.c:102:
undefined reference to `OMEIS_ReportError'
:/home/jtibau/Projects/OME/src/C/omeis/t/test- concurrent-write.c:65:
undefined reference to `OMEIS_ReportError'
collect2: ld returned 1 exit status
make[2]: *** [test-concurrent-write] Error 1
make[2]: Leaving directory `/home/jtibau/Projects/OME/src/C/omeis/t'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/jtibau/Projects/OME/src/C/omeis'
make: *** [all-recursive-am] Error 2
"
****************************************************************************************************************************************
First of all at the beginning it looks like it's searching for automake-1.4.
I've tried using that version and get pretty much the same undefined
reference errors at the end.
I'm using ubuntu dapper. I can install from the tarball too w/o problems.
Any hints?
--
Javier Tibau
Research Assistant
Center of Vision and Robotics (CVR)
ESPOL
Guayaquil - Ecuador
website: www.cvr.espol.edu.ec
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20061220/c78a166a/attachment.html>
More information about the ome-users
mailing list