[ome-users] install from cvs (8-18-06)

Bernd Jagla baj2107 at columbia.edu
Mon Aug 21 16:03:01 BST 2006 

I guess I should have tried it out first and not think first....

When trying to log in I get now the following error message:

Error serving OME::Web::Home: HTML::Template->new() : Cannot open included
file
/home/bernd/allOMEs/newOME/OME/src/html/Templates/System/Display/Many//gener
ic_ref_minimalList.tmpl : file not found. at
/usr/lib/perl5/site_perl/5.8.6/HTML/Template.pm line 1632
	HTML::Template::_init_template('HTML::Template=HASH(0xa81d81c)')
called at /usr/lib/perl5/site_perl/5.8.6/HTML/Template.pm line 1205
	HTML::Template::_init('HTML::Template=HASH(0xa81d81c)') called at
/usr/lib/perl5/site_perl/5.8.6/HTML/Template.pm line 1099
	HTML::Template::new('HTML::Template', 'filename',
'/home/bernd/allOMEs/newOME/OME/src/html/Templates/System/Disp...', 'path',
'/home/bernd/allOMEs/newOME/OME/src/html/Templates/System/Disp...',
'case_sensitive', 1) called at
/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Web/TemplateManager.pm line
367
	
OME::Web::TemplateManager::getRenderingTemplate('OME::Web::TemplateManager',
'undef', 'ref_minimalList', 'many') called at
/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Web/DBObjRender.pm line 365
	
OME::Web::DBObjRender::renderArray('OME::Web::DBObjRender=HASH(0xa83e178)',
'ARRAY(0xa841258)', 'ref_minimalList', 'HASH(0xa81f21c)') called at
/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Web/Home.pm line 130
	
OME::Web::Home::__getQuickViewProjectData('OME::Web::Home=HASH(0xa80b95c)',
'undef') called at
/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Web/Home.pm line 235
	OME::Web::Home::getPageBody('OME::Web::Home=HASH(0xa80b95c)',
'HTML::Template=HASH(0xa4e15b4)') called at
/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Web.pm line 557
	OME::Web::createOMEPage('OME::Web::Home=HASH(0xa80b95c)',
'HTML::Template=HASH(0xa4e15b4)') called at
/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Web.pm line 404
	OME::Web::serve('OME::Web::Home=HASH(0xa80b95c)') called at
/home/bernd/allOMEs/06_08_18/OME/src/perl2/serve.pl line 88
	eval {...} called at
/home/bernd/allOMEs/06_08_18/OME/src/perl2/serve.pl line 76
	
ModPerl::ROOT::ModPerl::Registry::home_bernd_allOMEs_06_08_18_OME_src_perl2_
serve_2epl::handler('Apache2::RequestRec=SCALAR(0xa788064)') called at
/usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/ModPerl/RegistryCoo
ker.pm line 203
	eval {...} called at
/usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/ModPerl/RegistryCoo
ker.pm line 203
	ModPerl::RegistryCooker::run('ModPerl::Registry=HASH(0xa7aa950)')
called at
/usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/ModPerl/RegistryCoo
ker.pm line 169
	
ModPerl::RegistryCooker::default_handler('ModPerl::Registry=HASH(0xa7aa950)'
) called at
/usr/lib/perl5/vendor_perl/5.8.6/i386-linux-thread-multi/ModPerl/Registry.pm
line 30
	ModPerl::Registry::handler('ModPerl::Registry',
'Apache2::RequestRec=SCALAR(0xa788064)') called at -e line 0
	eval {...} called at -e line 0


I guess this is related to the Apache problem I was reporting on earlier.
I also attached the Apachelog, but couldn't find anything in there...

Bernd


|-----Original Message-----
|From: ome-users-bounces at lists.openmicroscopy.org.uk [mailto:ome-users-
|bounces at lists.openmicroscopy.org.uk] On Behalf Of Bernd Jagla
|Sent: Monday, August 21, 2006 11:00 AM
|To: 'OME users'
|Subject: Re: [ome-users] install from cvs (8-18-06)
|
|I did a cvs update, and I got it installed.
|
|During installation I got an error message about a concatenation that did
|not create a problem, but I wanted to make you aware of it. See attached
|log
|file for more information...
|
|Also, I was surprised to see that the Apache config knew my old Template
|directory and was skipping some templates there. Is this the correct
|behavior? Unfortunately I cannot find the message because it was already
|overwritten on my terminal and there is no sign of it in the Apache Log...
|
|Thanks for the help,
|
|Best,
|
|Bernd
|
||-----Original Message-----
||From: ome-users-bounces at lists.openmicroscopy.org.uk [mailto:ome-users-
||bounces at lists.openmicroscopy.org.uk] On Behalf Of Bernd Jagla
||Sent: Friday, August 18, 2006 11:20 AM
||To: 'OME users'
||Subject: [ome-users] install from cvs (8-18-06)
||
||I was just trying to do a completely new CVS install (since I found some
||time to play with the new version.)
||
||And pretty close to end I got the following error:
||
||
||
||
||
||Initial user creation
||
||-----------------------
||
||
||
||This user will be yourself or the person who will administer the OME
||
||environment after installation. It is internal to OME. You will use this
||
||username and password to use OME and add new OME users and groups. The
||
||default data directory option is the path on this machine which contains
||
||(or will contain) the proprietary image files (greyscale TIFF's for
||
||example) you wish to import into OME. An example default data directory
||
||would be "/home/joe/my_ome_images".
||
||
||
||            First name: Bernd
||
||             Last name: Jagla
||
||              Username: bernd
||
||        E-mail address: baj2107 at columbia.edu
||
||Default data directory: /home/bernd
||
||
||
||Are these values correct ? [y/n]:
||
||Odd number of elements in anonymous hash at
||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Install/CoreDatabaseTablesT
|a
||sk.pm line 553.
||
||
||
||
||
||Errors executing task: Column 066e4a292457a2ad4e6bdeefcb6e9e58 does not
||exist at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/DBObject.pm line
||3150
||
||        OME::DBObject::__makeInsertSQLs('OME::UserState',
||'DBI::db=HASH(0xa3c6224)', 'HASH(0xa3d00b4)') called at
||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/DBObject.pm line 3337
||
||        OME::DBObject::__createNewInstance('OME::UserState',
||'DBI::db=HASH(0xa3c6224)', 'HASH(0xa3d00b4)') called at
||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Factory.pm line 856
||
||        eval {...} called at
||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Factory.pm line 855
||
||        OME::Factory::newObject('OME::Factory=HASH(0xa301f68)',
||'OME::UserState', 'HASH(0xa3d00b4)') called at
||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Install/CoreDatabaseTablesT
|a
||sk.pm line 553
||
||
||OME::Install::CoreDatabaseTablesTask::create_experimenter('OME::SessionMan
|a
||ger=HASH(0xa302e90)') called at
||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Install/CoreDatabaseTablesT
|a
||sk.pm line 1457
||
||        OME::Install::CoreDatabaseTablesTask::execute() called at (eval
|220)
||line 1
||
||        eval 'OME::Install::CoreDatabaseTablesTask::execute()
||
||;' called at install.pl line 80
||
||        main::run_tasks() called at install.pl line 265
||
|| at /home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Factory.pm line 858
||
||        OME::Factory::newObject('OME::Factory=HASH(0xa301f68)',
||'OME::UserState', 'HASH(0xa3d00b4)') called at
||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Install/CoreDatabaseTablesT
|a
||sk.pm line 553
||
||
||OME::Install::CoreDatabaseTablesTask::create_experimenter('OME::SessionMan
|a
||ger=HASH(0xa302e90)') called at
||/home/bernd/allOMEs/06_08_18/OME/src/perl2/OME/Install/CoreDatabaseTablesT
|a
||sk.pm line 1457
||
||        OME::Install::CoreDatabaseTablesTask::execute() called at (eval
|220)
||line 1
||
||        eval 'OME::Install::CoreDatabaseTablesTask::execute()
||
||;' called at install.pl line 80
||
||        main::run_tasks() called at install.pl line 265
||
||
||
|| at install.pl line 81
||
||        main::run_tasks() called at install.pl line 265
||
||# Looks like your test died before it could output anything.
||
||
||
||
||
||Does this mean anything to anyone?
||
||
||
||Thanks,
||
||
||
||Bernd

-------------- next part --------------
A non-text attachment was scrubbed...
Name: ApacheConfigTask.log
Type: application/octet-stream
Size: 4430 bytes
Desc: not available
URL: <http://lists.openmicroscopy.org.uk/pipermail/ome-users/attachments/20060821/01a63fe0/attachment.obj>

More information about the ome-users mailing list