[ome-users] Re: Metamorph

[Ilya Goldberg]

Thanks for Claude's comments.
An obvious question came up as I was taking a look at the code to 
support this:
Does MetaMorph STK ever store timepoints in a single STK file, or are 
the timepoints always in separate files?
even for single-channel, single-z, multi-t images?

-Ilya

On Oct 5, 2005, at 4:14 AM, Claude Bonnard wrote:

> Hello Ilya,
>
> Since I use Metamorph I want to give you my observations:
>
> - I can confirm that the files generated by the multidimentional 
> acquisition
> are ending by .STK (uppercase)
> - Same for the *_t*.STK for the time-lapse stacks
> -The last "*" before the .STK is  special at least for people delaing 
> with
> computer:
> the first timepoint is: mysample_t1.STK
> the second		mysample_t2.STK
> ..
> the 10th is:		mysample_t10.STK
>
> but NOT the logical order: 0001.STK --> 9999.STK
>
> As far as I'v heard they don't want to change this, making things a 
> bit more
> complicated for people who would like to trest their data on other 
> soft.
>
> With my best regards
> Claude
>
>
>
> On Oct 4,  9:30am, Ilya Goldberg wrote:
>> Subject: [ome-users] Re: Metamorph
>> Couple questions:
>> Is the pattern *_t*.STK always used for the time-lapse in MetaMorph
>> STKs?  I.e. the timepoint value is the second '*', always preceded by 
>> a
>> '_t', and always ends with '.STK'?
>> In other words, the FilenamePattern.RegEx (perl regular expression)
>> would be:
>> ^(.+)_t(\d+).STK$
>> with FilenamePattern.BaseName set to '$1' and FilenamePattern.TheT set
>> to 2
>> Is STK always upper-case?
>>
>> Anybody familiar with STK (MetaMorph) time-lapse images, please chime
>> in.
>>
>> Thanks!
>> -Ilya
>>
>> On Oct 1, 2005, at 2:14 PM, Jason Swedlow wrote:
>>
>>> Hi-
>>>
>>> All you RSS maniacs probably saw it, but I checked in a time-lapse 3D
>>> dataset in Metamorph STK format into TestImages.
>>>
>>> Enjoy!
>>>
>>> Jason
>>>
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>> -- End of excerpt from Ilya Goldberg
>
>
>
> -- 
> Claude Bonnard Ph.D.
> ISREC (Swiss Institute for Experimental Cancer Research)
> Microscopy, Imaging and Morphology Core Facility [MIM]
> Lab F216
> Ch des Boveresses 155
> CH-1066 Epalinges
> Switzerland
> email: claude.bonnard at isrec.unil.ch
> phone: [41-21]-692-5891
>   fax: [41-21]-652-6933
>