[ome-users] What did OME ever do for us?

[Ilya Goldberg]

On Jul 19, 2005, at 4:12 PM, Graham Klyne wrote:
>
> On this basis, I'm thinking that I can create category groups "Gene" 
> and "Strain", with categories like "Grip128", "Rpn6", "CG10151" that 
> are gene names or flybase identifiers for the gene group, and names 
> like "WT", "aly", "can", "comr" for the strain group, which are used 
> by researchers to identify wild type and mutant strains of drosophila 
> under examination.  Does this sound consistent with the intended use?  
> I assume new catagories (e.g. new gene names) can be added as needed?

Yes to all of the above.

>
> Is there any way to edit a category group after it has been created?  
> I just created one and mis-typed the description.

Editing?  BAH!
Actually you could just delete the Annotation MEX that created the CG.  
You can use the Search interface to look for MEXes.

>
> I guess that a category is assigned to an image by applying a custom 
> annotation of type "Classification", which asks for a category to be 
> selected.  Additional such annotations being added for each axis of 
> categorization?  (The documentation you mentioned isn't clear about 
> how one applies classification information).

The Dataset view in the web UI provides some tools for classifying 
images so you don't have to treat the Classification ST in a generic 
way.  You can also do this straigh-forwardly in Shoola.

-Ilya

>
> #g
>
>
> ---
> Graham Klyne
> Image Bioinformatics Research Group (http://www.bioimage.org/)
> Department of Zoology, University of Oxford
> South Parks Road, Oxford OX1 3PS, UK
> E-mail: <Graham.Klyne at zoo.ox.ac.uk>
> Direct phone: +44-(0)1865-281991
> Departmental fax: +44-(0)1865-310447
>
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