[ome-users] writing xml chain files for matlab scripts

[Anh Vu]

I imported and execute the chain and everything ran smoothly. One of
the things I noticed from view chain results is that the time stamp
seems to be repeats of the executed chain ID 1, which happens to be
the time when I first imported a dataset of images into OME.

Anh

On 8/9/05, T. J. Macura <tm289 at cam.ac.uk> wrote:
> Anh,
> 
> > There is an ome_pixelsTest.m file in the test folder and I was
> > wondering if you have a definition file(.ome) so that we can import
> > the matlab ome_pixelsTest.m file as a module.
> No ome_pixelsTest.m is a very old file. It probably should be
> deprecated.
> 
> > I guess what I wanted is an example file that handles the
> > input image from the dataset and output it accordingly.
> I wrote an example XML file for you today. It is based on the Matlab
> function histeq so it doesn't include a .m file.
> 
> The Analysis Module:
>         HistogramEqualization.ome
> The Analysis Chain:
>         HistogramEqualization.ome
> 
> Import the files in this order. The first three are required:
> 
> src/xml/OME/Analysis/Core/PixelIndicies.ome
> src/xml/OME/Analysis/Core/PixelSlices.ome
> src/xml/OME/Analysis/Core/PixelSliceModules.ome
> src/xml/OME/Analysis/Filters/HistogramEqualization.ome
> src/xml/OME/Tests/HistogramEqualization.ome
> 
> Write if you have questions.
> 
> Tom
> 
> On Aug 8, 2005, at 9:32 PM, Anh Vu wrote:
> 
> > There is an ome_pixelsTest.m file in the test folder and I was
> > wondering if you have a definition file(.ome) so that we can import
> > the matlab ome_pixelsTest.m file as a module. I guess what I wanted is
> > an example file that handles the input image from the dataset and
> > output it accordingly. The matlab input and output test files don't
> > seem to describe how matlab and it def file would handle the inputed
> > image from the dataset we run against.
> >
> > Thanks!
> > Anh
> > _______________________________________________
> > ome-users mailing list
> > ome-users at lists.openmicroscopy.org.uk
> > http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users
> >
> 
>