[ome-devel] omeroweb logging

[Josh Moore]

On Wed, May 30, 2018 at 10:26 AM, Paul Korir <pkorir at ebi.ac.uk> wrote:
> Dear Josh,

Hi Paul,


> Thank you very much for responding.

Gladly.


> You are right that it entails writing a new view in
> components/tools/OmeroWeb/omeroweb/webgateway/views.py called
> get_z_rois_json which takes an imageId and Z value. There is obviously a
> corresponding change to urls.py for the URLConf.
>
> I'll send you a link on Github soon showing what I've done that you can
> advise whether it's in keeping with your standards. It's basically a clone
> of get_rois_json.

We'd love to see it; thanks.


> It's working but the issue was that there were no logs at all.

Understood. Adding to the OMERO.web logging is certainly something
that needs to happen. Sorry for the confusion.

All the best,
~Josh



> Regards,
>
> Paul K. Korir, PhD
> Scientific Programmer
> EMBL-EBI
> 01223494422
>
> On 25/05/2018 17:49, Josh Moore wrote:
>>
>> On Thu, May 24, 2018 at 12:33 PM, Paul Korir <pkorir at ebi.ac.uk> wrote:
>>>
>>> Dear Devs,
>>
>> Hi Paul,
>>
>>
>>> I'm trying to add the functionality to extract rois by z by writing a
>>> view
>>> get_z_rois_json.
>>
>> Where are you adding this code? Directly to
>> components/tools/OmeroWeb/omeroweb? I'm going to assume so, but we
>> likely will want to discuss alternatives. Can you push your changes
>> somewhere on GitHub?
>>
>>
>>> However, I can't see debugging info neither in OMERO.web
>>> logs nor in nginx logs (acess/error).
>>
>> How have you deployed your OMERO.web? If you have nginx working and
>> you're not seeing anything in access.log, then something is very
>> weird. I wouldn't expect it to be in error.log unless your new
>> endpoint is successfully raising a 40x or 50x HTTP code.
>>
>>
>>
>>> I'm using the logger specified in
>>> python/omeroweb/views.py and even setting it to 'error' (i.e.
>>> logger.error('blah')).
>>
>> Can you send us the logs that you *do* have?  What does `bin/omero
>> admin diagnostics show`?
>>
>>
>>> I'm working with OMERO 5.3.3.
>>>
>>> I've restarted OMERO, OMERO.web and nginx to no avail.
>>>
>>> Help will be appreciated in figuring this out as it's very hard to write
>>> code blind.
>>
>> We can definitely understand that!
>>
>>
>>
>>> Regards,
>>
>> ~Josh
>> _______________________________________________
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>> ome-devel at lists.openmicroscopy.org.uk
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>
>
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