[ome-devel] Storing ImageJ ROI Provenance in OMERO

[Josh Moore]

On Wed, Jan 31, 2018 at 4:49 PM, Alison Walter <wackywalter017 at gmail.com> wrote:
> Hello all,

Hi Alison,


> I have been working to add ROI support to ImageJ-OMERO, and I have a
> question regarding how to store ROI provenance in OMERO.
>
> In ImageJ, ROIs can be combined via a number of operations (i.e. and, or,
> xor, etc.). This results in “composite ROIs” which have a tree-like
> structure, which I would like to preserve when these ROIs are uploaded to
> OMERO. However, I am not certain of the best way to achieve this. I’ve
> outlined a few options in the github issue linked below.
>
> https://github.com/imagej/imagej-omero/issues/71
>
> The github issue also provides an example of the tree-like structure of
> composite ROIs in ImageJ.
>
> Any insight you can provide on this issue would be greatly appreciated, and
> please feel free to let me know if you have any questions.

Issue 71 has certainly come up a couple of times within the Dundee
team, though no one has had any immediate insights. I'll add my
personal thoughts to the issue, but certainly, if others have
suggestions, use cases, etc. that they would like to add, please!


> Thank you very much,
> Alison Walter

~Josh