[ome-devel] x-ray crystallography images

[Munro, Ian]

Hello Again


For more information on contributing code to OME please see
http://www.openmicroscopy.org/site/support/contributing/

Also, in case it’s of use, there is an example of a PR to add a simple reader including ModuloAlong at
https://github.com/openmicroscopy/bioformats/pull/1245
I’m afraid, however, that  the extra dimension in this case isn’t angle.

Best Wishes

Ian





On 30 Jan 2017, at 12:45, Munro, Ian <i.munro at imperial.ac.uk<mailto:i.munro at imperial.ac.uk>> wrote:

Hello

I can’t comment specifically on your modality. However, we have used the OME to handle other modalities that don’t fit the standard 5-D OME model using the modulo
approach described at http://www.openmicroscopy.org/site/support/ome-model/developers/6d-7d-and-8d-storage.html.

Possibly of particular relevance ,from what you say,  we handled OPT data by using this to introduce an extra Angular dimension.
This was written as ModuloAlongZ .

You should be able to see how this looks when viewed using default OME tools at https://cisbic.bioinformatics.ic.ac.uk/omero/webclient/?show=image-119558
If you change the Z-slider you can see the  result.

Best Wishes


Ian
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