[ome-devel] ImageConvertor Problem
nantho2 at emory.edu
Wed Mar 9 03:08:57 GMT 2016
I was wondering if anybody has ever seen this kind of error on conversion:
If you look at the second channel you see the image is offset by a small amount and there's bad data at the top, and then on the third image more shift and more bad data. The raw vsi file I'm converting is here: https://drive.google.com/file/d/0BzfJAGNfrgieSG9DZ08tRjFfOVU/view?usp=sharing
I'm using the ImageConverter.java code but I've adapted it a little such that I can use it in a loop without it exiting. Available here: https://drive.google.com/file/d/0BzfJAGNfrgieWTJyQ0FtdUpnZzQ/view?usp=sharing
Essentially all I've done is renamed the class and made it public such that I can use it from my code, and I've added a function to reset the fields once it's finished such that it starts fresh without issue. I use this code in a loop to convert a number of files and pass the args as follows:
String args = new String;
args = "-series";
args = Integer.toString(series);
args = "-overwrite";
args = in_id;
args = out_id;
where in and out id's are the in and out paths, and the series variable is an int for the series I want to grab.
Any pointers would be much appreciated.
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