[ome-devel] IDR screen in Zegami

[Josh Moore]

On Thu, Jun 23, 2016 at 8:41 AM, Jason Swedlow (Staff)
<j.r.swedlow at dundee.ac.uk> wrote:
> Hi Roger-
>
> Thanks so much for this.  A quick look— I’m on not-so-great wifi, but seems
> very nice demo of what we want to enable with the IDR project.  Please do
> let update this list when the scripts are available.
>
> Are other comments, suggestions or ideas?

>From my side, it'd be interesting to know if you ran into any
particular obstacles attempting this. Though I can understand if it's
easiest to talk through that once the repo is up.

One minor suggestion is to strip the number from the phenotype keys,
treating them all as equivalent since the index carries no
information. We're working on performing that cleanup in the source
data now.

Cheers,
~Josh.


> Thanks again— this is just great.
>
> Cheers,
>
> Jason
>
>
> From: ome-devel <ome-devel-bounces at lists.openmicroscopy.org.uk> on behalf of
> Roger Noble <roger at zegami.com>
> Reply-To: OME Development <ome-devel at lists.openmicroscopy.org.uk>
> Date: Wednesday, 22 June 2016 23:11
> To: OME Development <ome-devel at lists.openmicroscopy.org.uk>
> Subject: [ome-devel] IDR screen in Zegami
>
> Hi All,
>
> I’ve just put together a Zegami collection based on the
> idr0002-heriche-condensation screen.
>
>
>
> You can have a look at it here http://demo.zegami.com/omero-idr.html
>
>
>
> I’ve also integrated the OMERO viewer to allow access to the time points and
> channels. This can be accessed by clicking an image and selecting the “OMERO
> Viewer” button on the upper right.
>
>
>
> To generate the collection I created a few Python scripts which called the
> JSON api endpoints made available at http://idr-demo.openmicroscopy.org. I’m
> in the process of creating a GitHub repository to host the scripts if anyone
> is interested. I’ll share once it’s ready.
>
>
>
> What do you think?
>
>
>
> Thanks
>
> Roger Noble
>
> CTO
>
> http://www.zegami.com
>
>
>
>
> The University of Dundee is a registered Scottish Charity, No: SC015096
>
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