[ome-devel] OME-Tiff writing using LOCI calls from MATLAB, and ModuloAlongT annotation

[Yellen, Gary]

Ian - I did give this a try and it did not fix either the file size or the slow speed problem.
Also, I reduced the size of the metadata (at least, of the ExperimentDescription string) by 5 KB, and the file size was reduced only by this amount.  So at least this particular metadata item is not being duplicated.
Best,
Gary

From: ome-devel [mailto:ome-devel-bounces at lists.openmicroscopy.org.uk] On Behalf Of Munro, Ian
Sent: Monday, October 27, 2014 9:02 AM
Cc: ome-devel at lists.openmicroscopy.org.uk
Subject: Re: [ome-devel] OME-Tiff writing using LOCI calls from MATLAB, and ModuloAlongT annotation

Hi Again Gary

Good to know that you've found a solution. However,  I find it puzzling that the files are different sizes.
We had a problem where bio-formats was writing multiple copies of the xml when called from Matlab.
The work-around was to add the following line:

java.lang.System.setProperty('javax.xml.transform.TransformerFactory', 'com.sun.org.apache.xalan.internal.xsltc.trax.TransformerFactoryImpl');

to the Matlab code as in the example that I sent.
Perhaps this might help.

Regards

Ian
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