[ome-devel] Directory exists but is not registered: CheckedPath(username_id)

[Josh Moore]

Re: http://qa.openmicroscopy.org.uk/qa/feedback/9572

On Oct 3, 2014, at 1:10 PM, S Simard wrote:

> Hello all,

Hi Seb,

> During the process of migrating OMERO servers (5.0.2) between machines, I think we're hitting a problem similar to the one described in [1], thus making all imports fail.
> 
> However I can't seem to find further debugging tips in that thread, so if someone could share some of them, that would be appreciated.

One other thread you might want to look at is:

  https://www.openmicroscopy.org/community/viewtopic.php?f=5&t=7537&p=14109&hilit=ManagedRepository#p14109


> I can tell that some entries have been added to the originalfile table - what approach would be recommended to deal with them?

Could you send the result of:

  select count(*), repo from originalfile group by repo;

and possibly Blitz logs from around the time of the migrations?

Cheers,
~Josh.


> select id, atime, ctime, mtime, mimetype, name, path from originalfile where mimetype = 'Repository';
> 
> 299401 | 2014-10-03 12:53:20.3   | 2014-10-03 12:53:20.3   | 2014-10-03 12:53:20.3   | Repository | repo              | /path/to/OMERO/
> 299402 | 2014-10-03 12:53:20.327 | 2014-10-03 12:53:20.327 | 2014-10-03 12:53:20.327 | Repository | ManagedRepository | /path/to/OMERO/repo/
> 299251 | 2014-09-29 20:11:10.268 | 2014-09-29 20:11:10.268 | 2014-09-29 20:11:10.268 | Repository | ManagedRepository | /path/to/OMERO/OMERO/repo/
>     17 | 2013-07-10 10:17:30.577 | 2013-07-10 10:17:30.577 | 2013-07-10 10:17:30.577 | Repository | scripts           | /path/to/OMERO.server-xxx/lib/
>     19 | 2013-07-10 10:17:30.605 | 2013-07-10 10:17:30.605 | 2013-07-10 10:17:30.605 | Repository | repo              | /path/to/OMERO/
>     18 | 2013-07-10 10:17:30.605 | 2013-07-10 10:17:30.605 | 2013-07-10 10:17:30.605 | Repository | ManagedRepository | /path/to/OMERO/repo/
> 
> 
> Thanks
> 
> Regards,
> Seb
> 
> [1] http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-May/004417.html